Last updated on 2025-07-16 00:50:21 CEST.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [79s/126s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.455, system: 0.037, elapsed: 1.752 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.955, system: 0.124, elapsed: 12.343 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.186, system: 0.015, elapsed: 0.260 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.792, system: 0.210, elapsed: 5.125 seconds]
Computing values for grid cells...
... done. [user: 0.164, system: 0.004, elapsed: 0.279 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.116, system: 0.413, elapsed: 20.623 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.498, system: 0.042, elapsed: 2.135 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.971, system: 0.102, elapsed: 12.192 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.185, system: 0.013, elapsed: 0.295 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.757, system: 0.162, elapsed: 6.473 seconds]
Computing values for grid cells...
... done. [user: 0.161, system: 0.003, elapsed: 0.259 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.097, system: 0.343, elapsed: 22.182 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.524, system: 0.031, elapsed: 2.704 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.980, system: 0.073, elapsed: 15.514 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.185, system: 0.010, elapsed: 0.528 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.726, system: 0.188, elapsed: 10.464 seconds]
Computing values for grid cells...
... done. [user: 0.163, system: 0.004, elapsed: 0.402 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.147, system: 0.217, elapsed: 1.768 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.348, system: 0.543, elapsed: 32.829 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.406, system: 0.029, elapsed: 3.684 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.033, system: 0.074, elapsed: 18.089 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.188, system: 0.012, elapsed: 0.270 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.715, system: 0.172, elapsed: 5.329 seconds]
Computing values for grid cells...
... done. [user: 0.162, system: 0.003, elapsed: 0.192 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.185, system: 0.464, elapsed: 15.037 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.344, system: 0.780, elapsed: 43.850 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [77s/115s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.449, system: 0.037, elapsed: 1.525 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.122, system: 0.049, elapsed: 8.283 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.184, system: 0.014, elapsed: 0.232 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.590, system: 0.189, elapsed: 4.268 seconds]
Computing values for grid cells...
... done. [user: 0.162, system: 0.005, elapsed: 0.183 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 14.028, system: 0.316, elapsed: 15.128 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.505, system: 0.034, elapsed: 1.734 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.008, system: 0.103, elapsed: 13.721 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.186, system: 0.012, elapsed: 0.330 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.698, system: 0.173, elapsed: 6.886 seconds]
Computing values for grid cells...
... done. [user: 0.165, system: 0.003, elapsed: 0.214 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.103, system: 0.348, elapsed: 23.649 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.568, system: 0.041, elapsed: 2.395 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.954, system: 0.081, elapsed: 13.894 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.183, system: 0.011, elapsed: 0.295 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.480, system: 0.159, elapsed: 4.661 seconds]
Computing values for grid cells...
... done. [user: 0.165, system: 0.003, elapsed: 0.199 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.067, system: 0.207, elapsed: 0.826 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.059, system: 0.542, elapsed: 23.224 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.462, system: 0.029, elapsed: 1.915 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.991, system: 0.068, elapsed: 18.503 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.187, system: 0.011, elapsed: 0.416 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.575, system: 0.166, elapsed: 7.811 seconds]
Computing values for grid cells...
... done. [user: 0.162, system: 0.002, elapsed: 0.333 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.143, system: 0.450, elapsed: 16.885 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.159, system: 0.749, elapsed: 47.013 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64