Last updated on 2025-12-28 11:49:38 CET.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [87s/121s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.674, system: 0.050, elapsed: 2.539 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.501, system: 0.138, elapsed: 12.117 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.201, system: 0.016, elapsed: 0.254 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.504, system: 0.444, elapsed: 6.285 seconds]
Computing values for grid cells...
... done. [user: 0.167, system: 0.005, elapsed: 0.201 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.606, system: 0.676, elapsed: 22.162 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.592, system: 0.045, elapsed: 1.862 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.339, system: 0.103, elapsed: 10.612 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.202, system: 0.013, elapsed: 0.224 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.493, system: 0.405, elapsed: 8.394 seconds]
Computing values for grid cells...
... done. [user: 0.179, system: 0.004, elapsed: 0.495 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.349, system: 0.594, elapsed: 22.368 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.601, system: 0.038, elapsed: 4.033 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.596, system: 0.092, elapsed: 20.288 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.200, system: 0.011, elapsed: 0.301 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.492, system: 0.412, elapsed: 6.989 seconds]
Computing values for grid cells...
... done. [user: 0.171, system: 0.004, elapsed: 0.283 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.226, system: 0.220, elapsed: 1.129 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.956, system: 0.814, elapsed: 34.282 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.598, system: 0.043, elapsed: 2.103 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.600, system: 0.098, elapsed: 12.164 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.210, system: 0.016, elapsed: 0.284 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.407, system: 0.406, elapsed: 5.966 seconds]
Computing values for grid cells...
... done. [user: 0.187, system: 0.007, elapsed: 0.246 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.832, system: 0.560, elapsed: 14.131 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 27.509, system: 1.153, elapsed: 35.754 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [89s/221s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.819, system: 0.081, elapsed: 3.130 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.948, system: 0.312, elapsed: 15.345 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.207, system: 0.021, elapsed: 0.300 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.400, system: 0.534, elapsed: 6.636 seconds]
Computing values for grid cells...
... done. [user: 0.174, system: 0.011, elapsed: 0.218 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.131, system: 0.993, elapsed: 26.446 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.859, system: 0.094, elapsed: 2.374 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.776, system: 0.255, elapsed: 27.990 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.200, system: 0.014, elapsed: 0.553 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.292, system: 0.402, elapsed: 12.664 seconds]
Computing values for grid cells...
... done. [user: 0.171, system: 0.004, elapsed: 0.545 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.850, system: 0.796, elapsed: 45.230 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.652, system: 0.038, elapsed: 4.599 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.644, system: 0.078, elapsed: 25.602 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.202, system: 0.014, elapsed: 0.513 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.332, system: 0.407, elapsed: 13.107 seconds]
Computing values for grid cells...
... done. [user: 0.179, system: 0.004, elapsed: 0.559 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.212, system: 0.320, elapsed: 2.303 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.888, system: 0.890, elapsed: 48.782 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.640, system: 0.038, elapsed: 4.748 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.640, system: 0.086, elapsed: 28.328 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.203, system: 0.014, elapsed: 0.763 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.307, system: 0.428, elapsed: 14.201 seconds]
Computing values for grid cells...
... done. [user: 0.170, system: 0.003, elapsed: 0.430 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.659, system: 0.526, elapsed: 36.490 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 27.294, system: 1.123, elapsed: 86.983 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64