Last updated on 2025-12-17 23:48:57 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.4 | 12.44 | 244.99 | 257.43 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.4 | 10.08 | 215.69 | 225.77 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1.4 | 25.00 | 289.70 | 314.70 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.1.4 | 29.00 | 402.64 | 431.64 | OK | |
| r-devel-windows-x86_64 | 1.1.4 | 20.00 | 187.00 | 207.00 | OK | |
| r-patched-linux-x86_64 | 1.1.4 | 15.29 | 246.27 | 261.56 | OK | |
| r-release-linux-x86_64 | 1.1.4 | 13.77 | 256.04 | 269.81 | OK | |
| r-release-macos-arm64 | 1.1.4 | OK | ||||
| r-release-macos-x86_64 | 1.1.4 | 10.00 | 208.00 | 218.00 | ERROR | |
| r-release-windows-x86_64 | 1.1.4 | 21.00 | 187.00 | 208.00 | OK | |
| r-oldrel-macos-arm64 | 1.1.4 | OK | ||||
| r-oldrel-macos-x86_64 | 1.1.4 | 10.00 | 239.00 | 249.00 | ERROR | |
| r-oldrel-windows-x86_64 | 1.1.4 | 24.00 | 244.00 | 268.00 | OK |
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [86s/147s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.786, system: 0.088, elapsed: 2.813 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.846, system: 0.294, elapsed: 13.209 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.207, system: 0.019, elapsed: 0.268 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.163, system: 0.310, elapsed: 5.380 seconds]
Computing values for grid cells...
... done. [user: 0.170, system: 0.006, elapsed: 0.185 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.740, system: 0.753, elapsed: 22.628 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.789, system: 0.109, elapsed: 2.512 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.957, system: 0.345, elapsed: 15.070 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.190, system: 0.013, elapsed: 0.601 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.035, system: 0.185, elapsed: 11.472 seconds]
Computing values for grid cells...
... done. [user: 0.177, system: 0.003, elapsed: 0.510 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.702, system: 0.696, elapsed: 31.459 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.639, system: 0.033, elapsed: 4.793 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.590, system: 0.062, elapsed: 20.131 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.198, system: 0.010, elapsed: 0.327 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.910, system: 0.167, elapsed: 7.007 seconds]
Computing values for grid cells...
... done. [user: 0.186, system: 0.014, elapsed: 0.344 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.231, system: 0.264, elapsed: 1.430 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.409, system: 0.582, elapsed: 35.504 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.536, system: 0.038, elapsed: 2.800 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.765, system: 0.109, elapsed: 16.999 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.201, system: 0.012, elapsed: 0.303 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.929, system: 0.183, elapsed: 5.156 seconds]
Computing values for grid cells...
... done. [user: 0.179, system: 0.004, elapsed: 0.249 seconds]
Starting 50 permutations...
... serially ...
|
| | 0%
|
|== | 2%
|
|=== | 4%
|
|===== | 6%
|
|====== | 8%
|
|======== | 10%
|
|========== | 12%
|
|=========== | 14%
|
|============= | 16%
|
|============== | 18%
|
|================ | 20%
|
|================== | 22%
|
|=================== | 24%
|
|===================== | 26%
|
|====================== | 28%
|
|======================== | 30%
|
|========================== | 32%
|
|=========================== | 34%
|
|============================= | 36%
|
|============================== | 38%
|
|================================ | 40%
|
|================================== | 42%
|
|=================================== | 44%
|
|===================================== | 46%
|
|====================================== | 48%
|
|======================================== | 50%
|
|========================================== | 52%
|
|=========================================== | 54%
|
|============================================= | 56%
|
|============================================== | 58%
|
|================================================ | 60%
|
|================================================== | 62%
|
|=================================================== | 64%
|
|===================================================== | 66%
|
|====================================================== | 68%
|
|======================================================== | 70%
|
|========================================================== | 72%
|
|=========================================================== | 74%
|
|============================================================= | 76%
|
|============================================================== | 78%
|
|================================================================ | 80%
|
|================================================================== | 82%
|
|=================================================================== | 84%
|
|===================================================================== | 86%
|
|====================================================================== | 88%
|
|======================================================================== | 90%
|
|========================================================================== | 92%
|
|=========================================================================== | 94%
|
|============================================================================= | 96%
|
|============================================================================== | 98%
|
|================================================================================| 100%
... computing probabilities from permuted values ...
... done. [user: 10.782, system: 0.515, elapsed: 21.442 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 27.058, system: 0.887, elapsed: 48.025 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [83s/147s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.591, system: 0.040, elapsed: 4.968 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.415, system: 0.070, elapsed: 18.444 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.196, system: 0.015, elapsed: 0.409 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.822, system: 0.206, elapsed: 6.645 seconds]
Computing values for grid cells...
... done. [user: 0.171, system: 0.006, elapsed: 0.311 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.759, system: 0.362, elapsed: 32.248 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.578, system: 0.029, elapsed: 2.182 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.303, system: 0.095, elapsed: 14.665 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.197, system: 0.013, elapsed: 0.261 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.882, system: 0.191, elapsed: 6.914 seconds]
Computing values for grid cells...
... done. [user: 0.168, system: 0.005, elapsed: 0.243 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.673, system: 0.363, elapsed: 25.225 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.633, system: 0.038, elapsed: 2.563 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.627, system: 0.110, elapsed: 18.206 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.195, system: 0.014, elapsed: 0.441 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.791, system: 0.184, elapsed: 6.415 seconds]
Computing values for grid cells...
... done. [user: 0.178, system: 0.004, elapsed: 0.277 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.123, system: 0.268, elapsed: 1.113 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.204, system: 0.646, elapsed: 30.282 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.589, system: 0.034, elapsed: 2.319 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.503, system: 0.084, elapsed: 17.009 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.189, system: 0.012, elapsed: 0.305 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.738, system: 0.182, elapsed: 6.006 seconds]
Computing values for grid cells...
... done. [user: 0.166, system: 0.002, elapsed: 0.291 seconds]
Starting 50 permutations...
... serially ...
|
| | 0%
|
|== | 2%
|
|=== | 4%
|
|===== | 6%
|
|====== | 8%
|
|======== | 10%
|
|========== | 12%
|
|=========== | 14%
|
|============= | 16%
|
|============== | 18%
|
|================ | 20%
|
|================== | 22%
|
|=================== | 24%
|
|===================== | 26%
|
|====================== | 28%
|
|======================== | 30%
|
|========================== | 32%
|
|=========================== | 34%
|
|============================= | 36%
|
|============================== | 38%
|
|================================ | 40%
|
|================================== | 42%
|
|=================================== | 44%
|
|===================================== | 46%
|
|====================================== | 48%
|
|======================================== | 50%
|
|========================================== | 52%
|
|=========================================== | 54%
|
|============================================= | 56%
|
|============================================== | 58%
|
|================================================ | 60%
|
|================================================== | 62%
|
|=================================================== | 64%
|
|===================================================== | 66%
|
|====================================================== | 68%
|
|======================================================== | 70%
|
|========================================================== | 72%
|
|=========================================================== | 74%
|
|============================================================= | 76%
|
|============================================================== | 78%
|
|================================================================ | 80%
|
|================================================================== | 82%
|
|=================================================================== | 84%
|
|===================================================================== | 86%
|
|====================================================================== | 88%
|
|======================================================================== | 90%
|
|========================================================================== | 92%
|
|=========================================================================== | 94%
|
|============================================================================= | 96%
|
|============================================================================== | 98%
|
|================================================================================| 100%
... computing probabilities from permuted values ...
... done. [user: 10.648, system: 0.493, elapsed: 19.811 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 26.476, system: 0.832, elapsed: 46.844 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64