Last updated on 2026-04-03 12:55:23 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.4 | 15.28 | 322.35 | 337.63 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.4 | 10.76 | 221.60 | 232.36 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1.4 | 22.00 | 303.98 | 325.98 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.1.4 | 31.00 | 347.80 | 378.80 | OK | |
| r-devel-macos-arm64 | 1.1.4 | 4.00 | 46.00 | 50.00 | OK | |
| r-devel-windows-x86_64 | 1.1.4 | 23.00 | 191.00 | 214.00 | OK | |
| r-patched-linux-x86_64 | 1.1.4 | 16.27 | 337.40 | 353.67 | OK | |
| r-release-linux-x86_64 | 1.1.4 | 14.16 | 346.01 | 360.17 | OK | |
| r-release-macos-arm64 | 1.1.4 | OK | ||||
| r-release-macos-x86_64 | 1.1.4 | 11.00 | 389.00 | 400.00 | ERROR | |
| r-release-windows-x86_64 | 1.1.4 | 21.00 | 195.00 | 216.00 | OK | |
| r-oldrel-macos-arm64 | 1.1.4 | OK | ||||
| r-oldrel-macos-x86_64 | 1.1.4 | 10.00 | 417.00 | 427.00 | ERROR | |
| r-oldrel-windows-x86_64 | 1.1.4 | 24.00 | 243.00 | 267.00 | OK |
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [101s/353s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.551, system: 0.050, elapsed: 2.263 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.473, system: 0.074, elapsed: 13.781 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.216, system: 0.016, elapsed: 0.759 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.590, system: 0.638, elapsed: 18.863 seconds]
Computing values for grid cells...
... done. [user: 0.175, system: 0.004, elapsed: 0.189 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 18.594, system: 0.811, elapsed: 36.946 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.515, system: 0.040, elapsed: 1.924 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.656, system: 0.090, elapsed: 14.850 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.221, system: 0.017, elapsed: 0.944 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.077, system: 0.877, elapsed: 124.983 seconds]
Computing values for grid cells...
... done. [user: 0.180, system: 0.006, elapsed: 0.219 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.230, system: 1.056, elapsed: 143.663 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.533, system: 0.034, elapsed: 2.448 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.523, system: 0.071, elapsed: 15.366 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.214, system: 0.016, elapsed: 0.885 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.729, system: 0.776, elapsed: 87.899 seconds]
Computing values for grid cells...
... done. [user: 0.172, system: 0.003, elapsed: 0.180 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.263, system: 0.238, elapsed: 1.025 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 20.131, system: 1.180, elapsed: 108.852 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.531, system: 0.035, elapsed: 1.970 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.511, system: 0.095, elapsed: 11.678 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.214, system: 0.015, elapsed: 1.050 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.710, system: 0.722, elapsed: 26.596 seconds]
Computing values for grid cells...
... done. [user: 0.176, system: 0.003, elapsed: 0.180 seconds]
Starting 50 permutations...
... serially ...
|
| | 0%
|
|== | 2%
|
|=== | 4%
|
|===== | 6%
|
|====== | 8%
|
|======== | 10%
|
|========== | 12%
|
|=========== | 14%
|
|============= | 16%
|
|============== | 18%
|
|================ | 20%
|
|================== | 22%
|
|=================== | 24%
|
|===================== | 26%
|
|====================== | 28%
|
|======================== | 30%
|
|========================== | 32%
|
|=========================== | 34%
|
|============================= | 36%
|
|============================== | 38%
|
|================================ | 40%
|
|================================== | 42%
|
|=================================== | 44%
|
|===================================== | 46%
|
|====================================== | 48%
|
|======================================== | 50%
|
|========================================== | 52%
|
|=========================================== | 54%
|
|============================================= | 56%
|
|============================================== | 58%
|
|================================================ | 60%
|
|================================================== | 62%
|
|=================================================== | 64%
|
|===================================================== | 66%
|
|====================================================== | 68%
|
|======================================================== | 70%
|
|========================================================== | 72%
|
|=========================================================== | 74%
|
|============================================================= | 76%
|
|============================================================== | 78%
|
|================================================================ | 80%
|
|================================================================== | 82%
|
|=================================================================== | 84%
|
|===================================================================== | 86%
|
|====================================================================== | 88%
|
|======================================================================== | 90%
|
|========================================================================== | 92%
|
|=========================================================================== | 94%
|
|============================================================================= | 96%
|
|============================================================================== | 98%
|
|================================================================================| 100%
... computing probabilities from permuted values ...
... done. [user: 14.018, system: 0.863, elapsed: 14.298 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 32.870, system: 1.764, elapsed: 56.653 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [97s/373s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.610, system: 0.042, elapsed: 1.823 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.574, system: 0.069, elapsed: 10.373 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.213, system: 0.018, elapsed: 0.690 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.361, system: 0.665, elapsed: 21.751 seconds]
Computing values for grid cells...
... done. [user: 0.165, system: 0.004, elapsed: 0.170 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 18.514, system: 0.821, elapsed: 35.466 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.613, system: 0.043, elapsed: 1.873 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.405, system: 0.064, elapsed: 10.948 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.210, system: 0.015, elapsed: 0.807 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.238, system: 0.599, elapsed: 20.547 seconds]
Computing values for grid cells...
... done. [user: 0.166, system: 0.004, elapsed: 0.173 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 18.226, system: 0.749, elapsed: 34.978 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.567, system: 0.049, elapsed: 1.867 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.481, system: 0.053, elapsed: 15.983 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.216, system: 0.017, elapsed: 1.028 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.827, system: 0.886, elapsed: 142.298 seconds]
Computing values for grid cells...
... done. [user: 0.175, system: 0.004, elapsed: 0.282 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.263, system: 0.331, elapsed: 1.381 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 20.212, system: 1.367, elapsed: 163.735 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.535, system: 0.033, elapsed: 2.634 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.447, system: 0.057, elapsed: 15.664 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.213, system: 0.016, elapsed: 0.949 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.626, system: 0.814, elapsed: 91.600 seconds]
Computing values for grid cells...
... done. [user: 0.166, system: 0.003, elapsed: 0.169 seconds]
Starting 50 permutations...
... serially ...
|
| | 0%
|
|== | 2%
|
|=== | 4%
|
|===== | 6%
|
|====== | 8%
|
|======== | 10%
|
|========== | 12%
|
|=========== | 14%
|
|============= | 16%
|
|============== | 18%
|
|================ | 20%
|
|================== | 22%
|
|=================== | 24%
|
|===================== | 26%
|
|====================== | 28%
|
|======================== | 30%
|
|========================== | 32%
|
|=========================== | 34%
|
|============================= | 36%
|
|============================== | 38%
|
|================================ | 40%
|
|================================== | 42%
|
|=================================== | 44%
|
|===================================== | 46%
|
|====================================== | 48%
|
|======================================== | 50%
|
|========================================== | 52%
|
|=========================================== | 54%
|
|============================================= | 56%
|
|============================================== | 58%
|
|================================================ | 60%
|
|================================================== | 62%
|
|=================================================== | 64%
|
|===================================================== | 66%
|
|====================================================== | 68%
|
|======================================================== | 70%
|
|========================================================== | 72%
|
|=========================================================== | 74%
|
|============================================================= | 76%
|
|============================================================== | 78%
|
|================================================================ | 80%
|
|================================================================== | 82%
|
|=================================================================== | 84%
|
|===================================================================== | 86%
|
|====================================================================== | 88%
|
|======================================================================== | 90%
|
|========================================================================== | 92%
|
|=========================================================================== | 94%
|
|============================================================================= | 96%
|
|============================================================================== | 98%
|
|================================================================================| 100%
... computing probabilities from permuted values ...
... done. [user: 11.492, system: 0.604, elapsed: 20.498 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 30.157, system: 1.559, elapsed: 132.538 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64