CRAN Package Check Results for Maintainer ‘Susanna Marquez <susanna.marquez at yale.edu>’

Last updated on 2026-03-30 12:53:42 CEST.

Package	ERROR	OK
alakazam	1	13
scoper	1	13
shazam	1	13
tigger	1	13

Package alakazam

Current CRAN status: ERROR: 1, OK: 13

Version: 1.4.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'AminoAcids-Vignette.Rmd' using rmarkdown ! Package pdftex.def Error: File `d78ec05f7921cb6bfe19e213b65debc7ae30c211.pdf' not found: using draft setting. Error: processing vignette 'AminoAcids-Vignette.Rmd' failed with diagnostics: LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/alakazam.Rcheck/vign_test/alakazam/vignettes/AminoAcids-Vignette.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See AminoAcids-Vignette.log for more info. --- failed re-building 'AminoAcids-Vignette.Rmd' --- re-building 'Diversity-Vignette.Rmd' using rmarkdown ! Package pdftex.def Error: File `f3a1fa47197dbace2ee75fe1f172909219ffc617.pdf' not found: using draft setting. Error: processing vignette 'Diversity-Vignette.Rmd' failed with diagnostics: LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/alakazam.Rcheck/vign_test/alakazam/vignettes/Diversity-Vignette.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See Diversity-Vignette.log for more info. --- failed re-building 'Diversity-Vignette.Rmd' --- re-building 'Fastq-Vignette.Rmd' using rmarkdown ! Package pdftex.def Error: File `13ff1b53ae8204ebf6fd5ab625907659b92848e4.pdf' not found: using draft setting. Error: processing vignette 'Fastq-Vignette.Rmd' failed with diagnostics: LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/alakazam.Rcheck/vign_test/alakazam/vignettes/Fastq-Vignette.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See Fastq-Vignette.log for more info. --- failed re-building 'Fastq-Vignette.Rmd' --- re-building 'Files-Vignette.Rmd' using rmarkdown --- finished re-building 'Files-Vignette.Rmd' --- re-building 'GeneUsage-Vignette.Rmd' using rmarkdown ! Package pdftex.def Error: File `5222ff49d8b70fbf45e02aba0ea6e1afdc7d4b81.pdf' not found: using draft setting. Error: processing vignette 'GeneUsage-Vignette.Rmd' failed with diagnostics: LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/alakazam.Rcheck/vign_test/alakazam/vignettes/GeneUsage-Vignette.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See GeneUsage-Vignette.log for more info. --- failed re-building 'GeneUsage-Vignette.Rmd' SUMMARY: processing the following files failed: 'AminoAcids-Vignette.Rmd' 'Diversity-Vignette.Rmd' 'Fastq-Vignette.Rmd' 'GeneUsage-Vignette.Rmd' Error: Vignette re-building failed. Execution halted Flavor: r-oldrel-windows-x86_64

Package scoper

Current CRAN status: ERROR: 1, OK: 13

Version: 1.4.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'Scoper-Vignette.Rmd' using rmarkdown ! Package pdftex.def Error: File `3078b6a2255b7748c529caeac446d4c0b2b9dc37.pdf' not found: using draft setting. Error: processing vignette 'Scoper-Vignette.Rmd' failed with diagnostics: LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/scoper.Rcheck/vign_test/scoper/vignettes/Scoper-Vignette.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See Scoper-Vignette.log for more info. --- failed re-building 'Scoper-Vignette.Rmd' SUMMARY: processing the following file failed: 'Scoper-Vignette.Rmd' Error: Vignette re-building failed. Execution halted Flavor: r-oldrel-windows-x86_64

Package shazam

Current CRAN status: ERROR: 1, OK: 13

Version: 1.3.1
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'Baseline-Vignette.Rmd' using rmarkdown ! Package pdftex.def Error: File `556c7eaa9a3ab01287e3a0b70c3386bee0834b50.pdf' not found: using draft setting. Error: processing vignette 'Baseline-Vignette.Rmd' failed with diagnostics: LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/shazam.Rcheck/vign_test/shazam/vignettes/Baseline-Vignette.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See Baseline-Vignette.log for more info. --- failed re-building 'Baseline-Vignette.Rmd' --- re-building 'DistToNearest-Vignette.Rmd' using rmarkdown ! Package pdftex.def Error: File `41eda445787879f32745fdb66ae06b7346991b1f.pdf' not found: using draft setting. Error: processing vignette 'DistToNearest-Vignette.Rmd' failed with diagnostics: LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/shazam.Rcheck/vign_test/shazam/vignettes/DistToNearest-Vignette.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See DistToNearest-Vignette.log for more info. --- failed re-building 'DistToNearest-Vignette.Rmd' --- re-building 'Mutation-Vignette.Rmd' using rmarkdown ! Package pdftex.def Error: File `45852bc6b2a48dec18a43fc88e82f5e598c93d23.pdf' not found: using draft setting. Error: processing vignette 'Mutation-Vignette.Rmd' failed with diagnostics: LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/shazam.Rcheck/vign_test/shazam/vignettes/Mutation-Vignette.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See Mutation-Vignette.log for more info. --- failed re-building 'Mutation-Vignette.Rmd' --- re-building 'Shmulate-Vignette.Rmd' using rmarkdown ! Package pdftex.def Error: File `470fdd97e585b059464af2c1dc4b67714031ecff.pdf' not found: using draft setting. Error: processing vignette 'Shmulate-Vignette.Rmd' failed with diagnostics: LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/shazam.Rcheck/vign_test/shazam/vignettes/Shmulate-Vignette.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See Shmulate-Vignette.log for more info. --- failed re-building 'Shmulate-Vignette.Rmd' --- re-building 'Targeting-Vignette.Rmd' using rmarkdown ! Package pdftex.def Error: File `ef4fd8e251794645eb423393fe44db92634a95f9.pdf' not found: using draft setting. Error: processing vignette 'Targeting-Vignette.Rmd' failed with diagnostics: LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/shazam.Rcheck/vign_test/shazam/vignettes/Targeting-Vignette.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See Targeting-Vignette.log for more info. --- failed re-building 'Targeting-Vignette.Rmd' SUMMARY: processing the following files failed: 'Baseline-Vignette.Rmd' 'DistToNearest-Vignette.Rmd' 'Mutation-Vignette.Rmd' 'Shmulate-Vignette.Rmd' 'Targeting-Vignette.Rmd' Error: Vignette re-building failed. Execution halted Flavor: r-oldrel-windows-x86_64

Package tigger

Current CRAN status: ERROR: 1, OK: 13

Version: 1.1.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'Tigger-Vignette.Rmd' using rmarkdown ! Package pdftex.def Error: File `7c69f819751f61ac689dde7f6d6cc262e77b3743.pdf' not found: using draft setting. Error: processing vignette 'Tigger-Vignette.Rmd' failed with diagnostics: LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/tigger.Rcheck/vign_test/tigger/vignettes/Tigger-Vignette.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See Tigger-Vignette.log for more info. --- failed re-building 'Tigger-Vignette.Rmd' SUMMARY: processing the following file failed: 'Tigger-Vignette.Rmd' Error: Vignette re-building failed. Execution halted Flavor: r-oldrel-windows-x86_64