Last updated on 2024-05-28 06:59:13 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| openxlsx | 1 | 10 | 1 |
Current CRAN status: ERROR: 1, NOTE: 10, OK: 1
Version: 4.2.5.2
Check: Rd files
Result: NOTE
checkRd: (-1) addWorksheet.Rd:68: Lost braces in \itemize; meant \describe ?
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checkRd: (-1) buildWorkbook.Rd:43: Lost braces in \itemize; meant \describe ?
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checkRd: (-1) buildWorkbook.Rd:68: Lost braces in \itemize; meant \describe ?
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checkRd: (-1) buildWorkbook.Rd:83: Lost braces in \itemize; meant \describe ?
checkRd: (-1) createStyle.Rd:51: Lost braces
51 | \item{\strong{COMMA}{ for comma separated thousands}}
| ^
checkRd: (-1) createStyle.Rd:58: Lost braces in \itemize; meant \describe ?
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checkRd: (-1) pageSetup.Rd:68: Lost braces in \itemize; meant \describe ?
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checkRd: (-1) setHeaderFooter.Rd:41: Lost braces in \itemize; meant \describe ?
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checkRd: (-1) write.xlsx.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) write.xlsx.Rd:39: Lost braces in \itemize; meant \describe ?
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checkRd: (-1) write.xlsx.Rd:50-51: Lost braces in \itemize; meant \describe ?
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checkRd: (-1) write.xlsx.Rd:68: Lost braces in \itemize; meant \describe ?
checkRd: (-1) write.xlsx.Rd:69: Lost braces in \itemize; meant \describe ?
checkRd: (-1) write.xlsx.Rd:74: Lost braces in \itemize; meant \describe ?
checkRd: (-1) writeData.Rd:64: Lost braces in \itemize; meant \describe ?
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checkRd: (-1) writeData.Rd:77: Lost braces in \itemize; meant \describe ?
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64
Version: 4.2.5.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [18s/28s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(openxlsx)
>
> test_check("openxlsx")
*** caught segfault ***
address 0x1, cause 'memory not mapped'
Traceback:
1: read_workbook(cols_in = cell_cols, rows_in = cell_rows, v = v, string_inds = string_refs, is_date = isDate, hasColNames = colNames, hasSepNames = sep.names, skipEmptyRows = skipEmptyRows, skipEmptyCols = skipEmptyCols, nRows = nRows, clean_names = clean_names)
2: read.xlsx.default(xlsxFile, sheet, startRow = 3, colNames = FALSE, detectDates = TRUE)
3: read.xlsx(xlsxFile, sheet, startRow = 3, colNames = FALSE, detectDates = TRUE)
4: eval(code, test_env)
5: eval(code, test_env)
6: withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error)
7: doTryCatch(return(expr), name, parentenv, handler)
8: tryCatchOne(expr, names, parentenv, handlers[[1L]])
9: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
10: doTryCatch(return(expr), name, parentenv, handler)
11: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), names[nh], parentenv, handlers[[nh]])
12: tryCatchList(expr, classes, parentenv, handlers)
13: tryCatch(withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error), error = handle_fatal, skip = function(e) { })
14: test_code(desc, code, env = parent.frame(), default_reporter = local_interactive_reporter())
15: test_that("Reading example workbook readTest.xlsx", { curr_wd <- getwd() xlsxFile <- system.file("extdata", "readTest.xlsx", package = "openxlsx") wb <- loadWorkbook(xlsxFile) sheet <- 1 x <- read.xlsx(xlsxFile, sheet) y <- read.xlsx(wb, sheet) expect_equal(dim(x), c(10, 7)) expect_equal(dim(y), c(10, 7)) expect_equal(x, y) x <- read.xlsx(xlsxFile, sheet, detectDates = TRUE) y <- read.xlsx(wb, sheet, detectDates = TRUE) expect_equal(dim(x), c(10, 7)) expect_equal(dim(y), c(10, 7)) expect_equal(x, y) x <- read.xlsx(xlsxFile, sheet, startRow = 3, colNames = FALSE, detectDates = TRUE) y <- read.xlsx(wb, sheet, startRow = 3, colNames = FALSE, detectDates = TRUE) expect_equal(dim(x), c(9, 5)) expect_equal(dim(y), c(9, 5)) expect_equal(x, y) x <- read.xlsx(xlsxFile, sheet, rows = 2:4, colNames = TRUE, detectDates = TRUE) y <- read.xlsx(wb, sheet, rows = 2:4, colNames = TRUE, detectDates = TRUE) expect_equal(dim(x), c(2, 6)) expect_equal(dim(y), c(2, 6)) expect_equal(x, y) x <- read.xlsx(xlsxFile, sheet, rows = 2:4, colNames = FALSE, detectDates = TRUE) y <- read.xlsx(wb, sheet, rows = 2:4, colNames = FALSE, detectDates = TRUE) expect_equal(dim(x), c(3, 6)) expect_equal(dim(y), c(3, 6)) expect_equal(x, y) x <- read.xlsx(xlsxFile, sheet, rows = 2:4, colNames = FALSE, detectDates = FALSE) y <- read.xlsx(wb, sheet, rows = 2:4, colNames = FALSE, detectDates = FALSE) expect_equal(dim(x), c(3, 6)) expect_equal(dim(y), c(3, 6)) expect_equal(x, y) x <- read.xlsx(xlsxFile, sheet, colNames = FALSE, detectDates = FALSE, cols = 2:4) y <- read.xlsx(wb, sheet, colNames = FALSE, detectDates = FALSE, cols = 2:4) expect_equal(dim(x), c(9, 2)) expect_equal(dim(y), c(9, 2)) expect_equal(x, y) sheet <- 2 x <- read.xlsx(xlsxFile, sheet) y <- read.xlsx(wb, sheet) expect_equal(dim(x), c(33, 9)) expect_equal(dim(y), c(33, 9)) expect_equal(x, y) x <- read.xlsx(xlsxFile, sheet, startRow = 3, colNames = FALSE, detectDates = TRUE) y <- read.xlsx(wb, sheet, startRow = 3, colNames = FALSE, detectDates = TRUE) expect_equal(dim(x), c(32, 9)) expect_equal(dim(y), c(32, 9)) expect_equal(x, y) x <- read.xlsx(xlsxFile, sheet, rows = 2:4, colNames = TRUE, detectDates = TRUE) y <- read.xlsx(wb, sheet, rows = 2:4, colNames = TRUE, detectDates = TRUE) expect_equal(dim(x), c(2, 9)) expect_equal(dim(y), c(2, 9)) expect_equal(x, y) x <- read.xlsx(xlsxFile, sheet, rows = 2:4, colNames = FALSE, detectDates = TRUE) y <- read.xlsx(wb, sheet, rows = 2:4, colNames = FALSE, detectDates = TRUE) expect_equal(dim(x), c(3, 9)) expect_equal(dim(y), c(3, 9)) expect_equal(x, y) x <- read.xlsx(xlsxFile, sheet, rows = 2:4, colNames = FALSE, detectDates = FALSE) y <- read.xlsx(wb, sheet, rows = 2:4, colNames = FALSE, detectDates = FALSE) expect_equal(dim(x), c(3, 9)) expect_equal(dim(y), c(3, 9)) expect_equal(x, y) x <- read.xlsx(xlsxFile, sheet, colNames = FALSE, detectDates = FALSE, cols = 2:4) y <- read.xlsx(wb, sheet, colNames = FALSE, detectDates = FALSE, cols = 2:4) expect_equal(dim(x), c(21, 3)) expect_equal(dim(y), c(21, 3)) expect_equal(x, y) sheet <- 3 x <- read.xlsx(xlsxFile, sheet) y <- read.xlsx(wb, sheet) expect_equal(dim(x), c(2083, 5)) expect_equal(dim(y), c(2083, 5)) expect_equal(x, y) x <- read.xlsx(xlsxFile, sheet, startRow = 3, colNames = FALSE, detectDates = TRUE) y <- read.xlsx(wb, sheet, startRow = 3, colNames = FALSE, detectDates = TRUE) expect_equal(dim(x), c(2084, 5)) expect_equal(dim(y), c(2084, 5)) expect_equal(x, y) x <- suppressWarnings(read.xlsx(xlsxFile, sheet, rows = 2:4, colNames = TRUE, detectDates = TRUE)) y <- suppressWarnings(read.xlsx(wb, sheet, rows = 2:4, colNames = TRUE, detectDates = TRUE)) expect_equal(dim(x), NULL) expect_equal(dim(y), NULL) expect_equal(x, y) x <- suppressWarnings(read.xlsx(xlsxFile, sheet, rows = 2:4, colNames = FALSE, detectDates = TRUE)) y <- suppressWarnings(read.xlsx(wb, sheet, rows = 2:4, colNames = FALSE, detectDates = TRUE)) expect_equal(dim(x), NULL) expect_equal(dim(y), NULL) expect_equal(x, NULL) expect_equal(y, NULL) expect_equal(x, y) x <- suppressWarnings(read.xlsx(xlsxFile, sheet, rows = 2:4, colNames = FALSE, detectDates = FALSE)) y <- suppressWarnings(read.xlsx(wb, sheet, rows = 2:4, colNames = FALSE, detectDates = FALSE)) expect_equal(dim(x), NULL) expect_equal(dim(y), NULL) expect_equal(x, NULL) expect_equal(y, NULL) expect_equal(x, y) x <- read.xlsx(xlsxFile, sheet, colNames = FALSE, detectDates = FALSE, cols = 2:4) y <- read.xlsx(wb, sheet, colNames = FALSE, detectDates = FALSE, cols = 2:4) expect_equal(dim(x), c(2084, 2)) expect_equal(dim(y), c(2084, 2)) expect_equal(x, y) sheet <- 5 x <- read.xlsx(xlsxFile, sheet) y <- read.xlsx(wb, sheet) expect_equal(dim(x), c(271, 297)) expect_equal(dim(y), c(271, 297)) expect_equal(x, y) x <- read.xlsx(xlsxFile, sheet, startRow = 3, colNames = FALSE, detectDates = TRUE) y <- read.xlsx(wb, sheet, startRow = 3, colNames = FALSE, detectDates = TRUE) expect_equal(dim(x), c(270, 297)) expect_equal(dim(y), c(270, 297)) expect_equal(x, y) x <- read.xlsx(xlsxFile, sheet, rows = 2:4, colNames = TRUE, detectDates = TRUE) y <- read.xlsx(wb, sheet, rows = 2:4, colNames = TRUE, detectDates = TRUE) expect_equal(dim(x), c(2, 297)) expect_equal(dim(y), c(2, 297)) expect_equal(x, y) x <- read.xlsx(xlsxFile, sheet, rows = 2:4, colNames = FALSE, detectDates = TRUE) y <- read.xlsx(wb, sheet, rows = 2:4, colNames = FALSE, detectDates = TRUE) expect_equal(dim(x), c(3, 297)) expect_equal(dim(y), c(3, 297)) expect_equal(x, y) x <- read.xlsx(xlsxFile, sheet, rows = 2:4, colNames = FALSE, detectDates = FALSE) y <- read.xlsx(wb, sheet, rows = 2:4, colNames = FALSE, detectDates = FALSE) expect_equal(dim(x), c(3, 297)) expect_equal(dim(y), c(3, 297)) expect_equal(x, y) x <- read.xlsx(xlsxFile, sheet, colNames = FALSE, detectDates = FALSE, cols = 2:4) y <- read.xlsx(wb, sheet, colNames = FALSE, detectDates = FALSE, cols = 2:4) expect_equal(dim(x), c(272, 3)) expect_equal(dim(y), c(272, 3)) expect_equal(x, y) expect_equal(object = getwd(), curr_wd)})
16: eval(code, test_env)
17: eval(code, test_env)
18: withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error)
19: doTryCatch(return(expr), name, parentenv, handler)
20: tryCatchOne(expr, names, parentenv, handlers[[1L]])
21: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
22: doTryCatch(return(expr), name, parentenv, handler)
23: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), names[nh], parentenv, handlers[[nh]])
24: tryCatchList(expr, classes, parentenv, handlers)
25: tryCatch(withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error), error = handle_fatal, skip = function(e) { })
26: test_code(test = NULL, code = exprs, env = env, default_reporter = StopReporter$new())
27: source_file(path, env = env(env), desc = desc, error_call = error_call)
28: FUN(X[[i]], ...)
29: lapply(test_paths, test_one_file, env = env, desc = desc, error_call = error_call)
30: doTryCatch(return(expr), name, parentenv, handler)
31: tryCatchOne(expr, names, parentenv, handlers[[1L]])
32: tryCatchList(expr, classes, parentenv, handlers)
33: tryCatch(code, testthat_abort_reporter = function(cnd) { cat(conditionMessage(cnd), "\n") NULL})
34: with_reporter(reporters$multi, lapply(test_paths, test_one_file, env = env, desc = desc, error_call = error_call))
35: test_files_serial(test_dir = test_dir, test_package = test_package, test_paths = test_paths, load_helpers = load_helpers, reporter = reporter, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, desc = desc, load_package = load_package, error_call = error_call)
36: test_files(test_dir = path, test_paths = test_paths, test_package = package, reporter = reporter, load_helpers = load_helpers, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, load_package = load_package, parallel = parallel)
37: test_dir("testthat", package = package, reporter = reporter, ..., load_package = "installed")
38: test_check("openxlsx")
An irrecoverable exception occurred. R is aborting now ...
Segmentation fault
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 4.2.5.2
Check: installed package size
Result: NOTE
installed size is 7.0Mb
sub-directories of 1Mb or more:
extdata 1.1Mb
libs 4.7Mb
Flavors: r-release-macos-arm64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64