Last updated on 2024-05-28 12:56:43 CEST.
| Package | WARN | NOTE | OK |
|---|---|---|---|
| GMCM | 1 | 8 | 3 |
Current CRAN status: WARN: 1, NOTE: 8, OK: 3
Version: 1.4
Check: Rd files
Result: NOTE
checkRd: (-1) rtheta.Rd:50-76: Lost braces in \itemize; meant \describe ?
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64
Version: 1.4
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘usage-example-general-model.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/GMCM.Rcheck/vign_test/GMCM/vignettes/usage-example-general-model_files/figure-html/sim-data-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13954 bytes
Input file size = 14044 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10156
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10156
Output IDAT size = 10156 bytes (3798 bytes decrease)
Output file size = 10234 bytes (3810 bytes = 27.13% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/GMCM.Rcheck/vign_test/GMCM/vignettes/usage-example-general-model_files/figure-html/data-plot-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 41457 bytes
Input file size = 41595 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31836
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31836
Output IDAT size = 31836 bytes (9621 bytes decrease)
Output file size = 31914 bytes (9681 bytes = 23.27% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/GMCM.Rcheck/vign_test/GMCM/vignettes/usage-example-general-model_files/figure-html/select-data-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 15572 bytes
Input file size = 16442 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15099
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 14986
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 14986
Output IDAT size = 14986 bytes (586 bytes decrease)
Output file size = 15064 bytes (1378 bytes = 8.38% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/GMCM.Rcheck/vign_test/GMCM/vignettes/usage-example-general-model_files/figure-html/plot_results-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 10194 bytes
Input file size = 10284 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7949
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7949
Output IDAT size = 7949 bytes (2245 bytes decrease)
Output file size = 8027 bytes (2257 bytes = 21.95% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/GMCM.Rcheck/vign_test/GMCM/vignettes/usage-example-general-model_files/figure-html/plot_theta-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13035 bytes
Input file size = 13125 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9458
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9458
Output IDAT size = 9458 bytes (3577 bytes decrease)
Output file size = 9536 bytes (3589 bytes = 27.34% decrease)
--- finished re-building ‘usage-example-general-model.Rmd’
--- re-building ‘usage-example-special-model.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/GMCM.Rcheck/vign_test/GMCM/vignettes/usage-example-special-model_files/figure-html/unnamed-chunk-2-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 16529 bytes
Input file size = 16631 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12066
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12066
Output IDAT size = 12066 bytes (4463 bytes decrease)
Output file size = 12144 bytes (4487 bytes = 26.98% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/GMCM.Rcheck/vign_test/GMCM/vignettes/usage-example-special-model_files/figure-html/plot_results-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 19106 bytes
Input file size = 19208 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13810
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13810
Output IDAT size = 13810 bytes (5296 bytes decrease)
Output file size = 13888 bytes (5320 bytes = 27.70% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/GMCM.Rcheck/vign_test/GMCM/vignettes/usage-example-special-model_files/figure-html/plot_results-2.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 14852 bytes
Input file size = 14942 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11288
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11288
Output IDAT size = 11288 bytes (3564 bytes decrease)
Output file size = 11366 bytes (3576 bytes = 23.93% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/GMCM.Rcheck/vign_test/GMCM/vignettes/usage-example-special-model_files/figure-html/plot_results-3.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 17242 bytes
Input file size = 17344 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13619
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13619
Output IDAT size = 13619 bytes (3623 bytes decrease)
Output file size = 13697 bytes (3647 bytes = 21.03% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/GMCM.Rcheck/vign_test/GMCM/vignettes/usage-example-special-model_files/figure-html/plot_theta-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 19614 bytes
Input file size = 19716 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14798
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14798
Output IDAT size = 14798 bytes (4816 bytes decrease)
Output file size = 14876 bytes (4840 bytes = 24.55% decrease)
--- finished re-building ‘usage-example-special-model.Rmd’
--- re-building ‘usage-shiny-graphical-interface.Rmd’ using rmarkdown
--- finished re-building ‘usage-shiny-graphical-interface.Rmd’
--- re-building ‘GMCM-JStatSoft.Rnw’ using knitr
Error: processing vignette 'GMCM-JStatSoft.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'GMCM-JStatSoft.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.455 \hldef
{> }\hlkwd{library}\hldef{(}\hlsng{"GMCM"}\hldef{)}
?
! Emergency stop.
! Emergency stop.
l.455
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘GMCM-JStatSoft.Rnw’
SUMMARY: processing the following file failed:
‘GMCM-JStatSoft.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc