volcano3D: 3D Volcano Plots and Polar Plots for Three-Class Data
Generates interactive plots for analysing and visualising three-class high dimensional data. It is particularly suited to visualising differences in continuous attributes such as gene/protein/biomarker expression levels between three groups. Differential gene/biomarker expression analysis between two classes is typically shown as a volcano plot. However, with three groups this type of visualisation is particularly difficult to interpret. This package generates 3D volcano plots and 3-way polar plots for easier interpretation of three-class data.
| Version: | 2.0.9 |
| Depends: | R (≥ 3.5) |
| Imports: | plotly, ggplot2, ggpubr, htmlwidgets, magrittr, methods, Rfast, rlang, matrixTests |
| Suggests: | DESeq2, edgeR, limma, qvalue, SummarizedExperiment, knitr, rmarkdown, kableExtra, usethis, easylabel |
| Published: | 2023-05-17 |
| DOI: | 10.32614/CRAN.package.volcano3D |
| Author: | Katriona Goldmann 
[aut, cre],
Myles Lewis [aut] |
| Maintainer: | Katriona Goldmann <katrionagoldmann at gmail.com> |
| BugReports: | https://github.com/KatrionaGoldmann/volcano3D/issues |
| License: | GPL-2 |
| URL: | https://katrionagoldmann.github.io/volcano3D/index.html, https://github.com/KatrionaGoldmann/volcano3D |
| NeedsCompilation: | no |
| Language: | en-gb |
| Materials: | NEWS |
| In views: | Omics |
| CRAN checks: | volcano3D results |
Documentation:
| Reference manual: | volcano3D.pdf |
| Vignettes: |
volcano3D 2x3-way analysis |
Downloads:
| Package source: | volcano3D_2.0.9.tar.gz |
| Windows binaries: | r-devel: volcano3D_2.0.9.zip, r-release: volcano3D_2.0.9.zip, r-oldrel: volcano3D_2.0.9.zip |
| macOS binaries: | r-release (arm64): volcano3D_2.0.9.tgz, r-oldrel (arm64): volcano3D_2.0.9.tgz, r-release (x86_64): volcano3D_2.0.9.tgz, r-oldrel (x86_64): volcano3D_2.0.9.tgz |
| Old sources: | volcano3D archive |
Linking:
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