secuTrialR 1.3.2 and 1.3.3
- clear some notes and warnings in preparation for CRAN submission (#265)
secuTrialR 1.3.1
build_secuTrial_url() now has optional parameter prefix with default "apps/WebObjects/". (#263)
secuTrialR 1.3.0
- bug fix to read escaped enclosure characters in free text items, e.g.
\" (#220, #261)
read_export_options() now also reads enclosure character from header.print.secuTrialoptions() now also prints enclosure character. Quote and Tabulator are now printed as '\"' and '\t' rather than '"' and ' '.read_export_table() now uses readr::read_delim() with options escape_backslash = TRUE and quote = export_options$quote
- warning for ISO-8859 encoding moved from
read_export_table() to read_secuTrial_raw() (one warning per export file instead of several warnings for each table)
read_export_options() now reads only the first 10 lines to find the encoding. Reading all lines would fail if the export options were ISO-8859 encoded and contained ‘problematic’ characaters, e.g. in center names.- Removed
encoding option in plot_recruitment(): Not needed here, as centres are read with correct encoding in read_secuTrial_raw() and stored in the secuTrialR object.
secuTrialR 1.2.0
write_secuTrial() no longer allows format = "sas" due to deprecation of write_sas in haven (version 2.5.2).read_secuTrial_raw now produces a more explicit warning when ISO-8859 encoding is used. Recent changes in R seem to have reduced compatibility with this encoding.
secuTrialR 1.1.1
- fix CRAN notes - remove codecov badge, check class via inherits
secuTrialR 1.1.0
- warning regarding overwritten
pat_id variable
secuTrialR 1.0.12
- adapt
as.data.frame.secuTrialData() to allow named character vectors as option data.frames to specify custom names for data.frames (#250)
secuTrialR 1.0.11
- recommendation to export with short names (#238)
- addition of arguments in
read_export_table etc allowing passing other options to read.table (#240)
- addition of
dictionary_secuTrial function for easy access a data dictionary (#241)
formtablename added to the output of visit_structure for better reference between the table names and labels (#242)- addition of
export_date and export_datetime for easier access to the export date (and time) (#246)
secuTrialR 1.0.10
- adapt
read_export_options() to work with exports from new secuTrial version (6.1.2.5 - 6.3.2.5) (#245)
secuTrialR 1.0.9
- transferred the
Maintainer tag to Alan Haynes
secuTrialR 1.0.8
- reverted
factorize_secuTrial() back to 1.0.3 version due to problems with lookup table factorization (#224)
- added citation (doi: 10.21105/joss.02816)
secuTrialR 1.0.7
- moved
tcltk and igraph dependency to suggested (#223)
secuTrialR 1.0.6
- added
skip parameter to read_validation_overview() (#212)
secuTrialR 1.0.5
- fixed a bug where
subset_secuTrial() would drop labels during the subsetting process (#203)
secuTrialR 1.0.4
- improved import speed, specifically through changes in
dates_secutrial() and factorize_secutrial() (#204)
secuTrialR 1.0.1, 1.0.2, 1.0.3
- adjustments to handle review feedback from CRAN (#190)
secuTrialR 1.0.0
- clarify correct options in
read_secuTrial() failure message (#187)
- check for
project_setup in visit_structure() (#181)
secuTrialR 0.9.1
- added “Form meta data: Structure” export option information to
export_options (#182)
- added error handling for missing structure data when running
annual_recruitment() and return_random_participants() (#182)
secuTrialR 0.9.0
- restructuring in preparation for a release on CRAN
secuTrialR 0.8.9
- added suggestion to NOT export form data of hidden fields (#177)
secuTrialR 0.8.8
- added check to make sure that specified centres are part of the export in
return_random_participants() (#151)
secuTrialR 0.8.7
- extended failure comment in
read_secuTrial() to indicate that the problem could be a rectangular export file (#168)
- added “Form data of hidden fields” export option information to
export_options (#171)
- added
return_hidden_items() function (#172)
secuTrialR 0.8.6
- bug fix: presence of the audit trail was incorrectly identified due to a comment in the source file of the export options (see #155, comments from @suvi-subra and @OliviaEbnerIAS)
secuTrialR 0.8.5
- Added sorting option to visit_structure. (#152)
secuTrialR 0.8.4
- adjusted warning message in
label_secuTrial()
- only allow unique labels in
label_secuTrial()
- added “Frequent warning messages” paragraph to the vignette (#156)
secuTrialR 0.8.3
- added up-to-date vignette (#99)
- path in
print.secuTrialdata is now wrapped at 80 characters
secuTrialR 0.8.2
secutrialoptions class is now secuTrialoptions.
secuTrialR 0.8.1
- add appveyor testing, pkgdown site
- fix possible bug on windows due to regex in .prep_line_items (used in plot_recruitment) (#147)
secuTrialR 0.8.0
- Changed license for the package from GPL-2 to MIT.
secuTrialR 0.7.9
- The general nomenclature for a study subject will from now on be participant (pat). All variations of this (e.g. case, patient) have been adjusted in the code and the documentation.
secuTrialR 0.7.8
- Removed generic
plot() function for secuTrialdata objects. (#139)
secuTrialR 0.7.7
read_secuTrial() and read_secuTrial_raw() now check if the input file exists. (#137)
secuTrialR 0.7.6
factorize_secuTrial() warning messages have been adjusted to improve trouble shooting experience. (#134, #135)
secuTrialR 0.7.5
dates_secuTrial() incomplete date warnings are now concatenated and returned as one warning per form instead of many. (#124)
secuTrialR 0.7.4
- Fixed issue #121 on GitHub.
factorize_secuTrial() can now handle exports which have the reset option enabled in radio buttons.
secuTrialR 0.7.3
write_secuTrial() now allows xpt version 8 files to be written. (closes #57)
secuTrialR 0.7.2
check_export_options() function was added. It informs on deviations from suggested export options. (closes #17)- Removed tracking of obsolete export options (
partial_date_string, partial_date_handling, unknown_date_string).
- Added
format_info (e.g. “CSV format for MS Excel”) to export_options.
secuTrialR 0.7.1
- Fixed issue #116 on GitHub.
secuTrialR 0.7.0
subset_secuTrial() function was added. It allows subsetting of secuTrialdata based on patient ID and/or study centre name.get_participants() function was added. It allows easy extractions of participant info from a secuTrialdata object.
secuTrialR 0.6.5
return_random_cases() now returns a list. The first element are the cases and the second element is the output of RNGkind().
secuTrialR 0.6.4
- New function
diff_secuTrial() added to allow light weight comparison of the setup of two secuTrial exports.
secuTrialR 0.6.3
- Metadata variables are now also transformed to date and datetime formats, whenever appropriate.
secuTrialR 0.6.2
factorize_secuTrial() now no longer triggers an unexpected warning when the name of a secuTrial lookuptable is equal to the name of the variable it is being used in. (PR #108)
secuTrialR 0.6.1
return_random_cases() has been added to the package. It allows to sample a random subset of cases from a secuTrial export in a reproducible fashion.
secuTrialR 0.6.0
read_secuTrial_raw() and read_secuTrial() no longer fail due to missing Add-ID, centre information or project setup in export data. Instead, adding of pat_id (no Add-ID), centre (no centre information) and visit_name (no project setup) to the data tables is now omitted if the relevant data for the operation is not available.
secuTrialR 0.5.5
read_secuTrial_raw() and read_secuTrial() no longer fail due to missing “Description” in export options.
secuTrialR 0.5.4
dates_secuTrial() now warns if not all dates were parsed (expected if there are incomplete dates).factorize_secuTrial() now warns if there are issues with the factorization (not expected to trigger).
secuTrialR 0.5.2
- New function
build_secuTrial_url() has been added. It allows users to easily compose URLs to specific secuTrial forms.
secuTrialR 0.5.0
- The function name of
read_secuTrial_export() has been changed to read_secuTrial_raw() to avoid confusion with read_secuTrial().
secuTrialR 0.4.16
- As of version 0.4.17, changes will be recorded in the NEWS file.