saros.base 1.2.0

New features

Added file logging for excluded/ignored variables via log_file parameter in refine_chapter_overview(). All removal functions now log which variables/entries are excluded and why (all NA, low n, non-significant, no overlap, type mismatch).
Added detect_malformed_quarto_project(): exported function to diagnose malformed Quarto website projects (missing index.qmd, missing title in .qmd files, extensible for future checks).
New function check_variable_labels() to validate variable labels for saros compatibility.
New function sanitize_chr_vec for ensuring that character vectors are clean:
- Normalized Unicode strings to NFC form.
- Removed non-printable characters.
- Replaced common encoding artifacts (e.g., â€™ to ').
Added chunk template variant 4 (get_chunk_template_defaults(4)) for mesos reports using the new saros package functions crowd_plots_as_tabset() and txt_from_cat_mesos_plots(). This provides a more streamlined approach for generating mesos-specific plots and tables.

Vectorized password lookup in refer_main_password_file() for better performance.

Fixed critical sorting bug in refine_chapter_overview() where output was incorrectly sorted by variable labels instead of variable positions when using default arguments. The fix includes:
- Corrected arrange_expr_producer() to properly name arrange expressions with column names instead of logical values.
- Added ungrouping before sorting in arrange_arrangers_and_groups() to prevent grouped data from interfering with global sort order.
- Made chapter reordering stable to preserve within-chapter sorting.
Fixed regex bugs in check_variable_labels().
Fixed tidyselect warnings in look_for_extended().
Improved robustness of setup_mesos().
Added validation checks for email and username columns in create_email_credentials().

Refactored long functions by extracting helper functions:
- validate_refine_chapter_overview_args()
- validate_draft_report_args()
- create_mesos_stubs_from_main_files()
- gen_qmd_file()
- create_includes_content_path_df()
- validate_chapter_structure()
- look_for_extended()
- process_yaml()
Removed broken and unused create_heading() function.
Removed commented-out and unused code.
Refactored convert_mesos_groups_to_df and its helper functions to ensure consistent handling of mesos_groups.
Added a clean_group_data internal helper function to:
- Drop unused levels for factors.
- Remove NA and blank strings.

Added 169 comprehensive tests across multiple modules (from 331 to 500+ tests).
Added 16 tests for refine_chapter_overview().
Added comprehensive sorting tests in test-arrange2.R to verify position-based sorting with intentionally mismatched variable names, labels, and positions.
Added 27 tests for logging functionality.
Added tests for setup_mesos helper functions, utility functions, access restriction setup, and directory structure helpers.

create_directory_structure() example does not create files and folders on disk to save time.
Templates for mesos output now include newlines between target and others. Thanks to Jon Furuholt for the suggestion.
draft_report() now has argument write_qmd to toggle the creation of qmd-files.
Attempted fix of internal arrange2 sorting function. Very hard to get right.

Total revision of the entire architecture for maximum flexibility, stability and performance.
Uses glue templates for creating chunks, see refine_chapter_structure().
draft_report()
Breaking changes for mesos setup, now uses setup_mesos() as well for creating stub files referring to a smaller set of main files created by draft_report().
Countless bugfixes.

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