| Type: | Package |
| Title: | Histone ChIP-Seq qPCR Analyzer |
| Version: | 1.5 |
| Date: | 2018-02-02 |
| Author: | Alireza Lorzadeh |
| Maintainer: | Alireza Lorzadeh <alorzadeh@bcgsc.ca> |
| Description: | Quality control of chromatin immunoprecipitation libraries (ChIP-seq) by quantitative polymerase chain reaction (qPCR). This function calculates Enrichment value with respect to reference for each histone modification (specific to 'Vii7' software http://www.thermofisher.com/ca/en/home/life-science/pcr/real-time-pcr/real-time-pcr-instruments/viia-7-real-time-pcr-system/viia-7-software.html). This function is applicable to full panel of histone modifications described by International Human Epigenomic Consortium (IHEC). |
| Imports: | ggplot2 |
| License: | MIT + file LICENSE |
| Depends: | R (≥ 2.10) |
| NeedsCompilation: | no |
| Packaged: | 2018-02-08 18:09:49 UTC; epigenomics_lab_01 |
| Repository: | CRAN |
| Date/Publication: | 2018-02-08 18:44:50 UTC |
Histone ChIP-Seq qPCR Analyzer Histone ChIP-Seq qPCR Analyzer
Description
Quality control of chromatin immunoprecipitation libraries (ChIP-seq) by quantitative polymerase chain reaction (qPCR). This function calculates Enrichment value with respect to reference for each histone modification (specific to 'Vii7' software <http://www.thermofisher.com/ca/en/home/life-science/pcr/real-time-pcr/real-time-pcr-instruments/viia-7-real-time-pcr-system/viia-7-software.html>). This function is applicable to full panel of histone modifications described by International Human Epigenomic Consortium (IHEC). Quality control of chromatin immunoprecipitation libraries (ChIP-seq) by quantitative polymerase chain reaction (qPCR). This function calculates Enrichment value with respect to reference for each histone modification (specific to 'Vii7' software <http://www.thermofisher.com/ca/en/home/life-science/pcr/real-time-pcr/real-time-pcr-instruments/viia-7-real-time-pcr-system/viia-7-software.html>). This function is applicable to full panel of histone modifications described by International Human Epigenomic Consortium (IHEC).
Details
The DESCRIPTION file:
| Package: | qcQpcr |
| Type: | Package |
| Title: | Histone ChIP-Seq qPCR Analyzer |
| Version: | 1.5 |
| Date: | 2018-02-02 |
| Author: | Alireza Lorzadeh |
| Maintainer: | Alireza Lorzadeh <alorzadeh@bcgsc.ca> |
| Description: | Quality control of chromatin immunoprecipitation libraries (ChIP-seq) by quantitative polymerase chain reaction (qPCR). This function calculates Enrichment value with respect to reference for each histone modification (specific to 'Vii7' software <http://www.thermofisher.com/ca/en/home/life-science/pcr/real-time-pcr/real-time-pcr-instruments/viia-7-real-time-pcr-system/viia-7-software.html>). This function is applicable to full panel of histone modifications described by International Human Epigenomic Consortium (IHEC). |
| Imports: | ggplot2 |
| License: | MIT + file LICENSE |
| Depends: | R (>= 2.10) |
| NeedsCompilation: | no |
| Packaged: | 2018-02-02 23:24:48 UTC; epigenomics_lab_01 |
Index of help topics:
SampleTest qPCR ChIP-seq Results
qcQpcr Histone ChIP-Seq qPCR Analyzer
qcQpcr-package Histone ChIP-Seq qPCR Analyzer Histone ChIP-Seq
qPCR Analyzer
qcQpcr(xx,'Title for you graph')
Author(s)
Alireza Lorzadeh
Examples
library(ggplot2)
data(SampleTest)
qcQpcr(SampleTest,'Title for your graph')
qPCR ChIP-seq Results
Description
A dataset containing the the CT values of ChIPseq libraries.
Usage
SampleTestFormat
A data frame with 82 rows and 11 variables
Source
Hirst Lab, UBC Vancouver, Canada
Histone ChIP-Seq qPCR Analyzer
Description
Quality control of chromatin immunoprecipitation libraries (ChIP-seq) by quantitative polymerase chain reaction (qPCR). This function calculates Enrichment value with respect to reference for each histone modification (specific to 'Vii7' software <http://www.thermofisher.com/ca/en/home/life-science/pcr/real-time-pcr/real-time-pcr-instruments/viia-7-real-time-pcr-system/viia-7-software.html>). This function is applicable to full panel of histone modifications described by International Human Epigenomic Consortium (IHEC).
Usage
qcQpcr(xx, Name)
Arguments
xx |
'Your Data Set' |
Name |
'.... Title for you graph, (ie: Projects name and date)' |
Author(s)
Alireza Lorzadeh
Examples
library(ggplot2)
data(SampleTest)
qcQpcr(SampleTest,'Title for your graph')