popkin: Estimate Kinship and FST under Arbitrary Population Structure

Provides functions to estimate the kinship matrix of individuals from a large set of biallelic SNPs, and extract inbreeding coefficients and the generalized FST (Wright's fixation index). Method described in Ochoa and Storey (2021) <doi:10.1371/journal.pgen.1009241>.

Version:	1.3.23
Depends:	R (≥ 3.5.0)
Imports:	RColorBrewer, graphics, grDevices, ape
Suggests:	BEDMatrix, testthat, knitr, rmarkdown, bnpsd
Published:	2023-01-07
DOI:	10.32614/CRAN.package.popkin
Author:	Alejandro Ochoa [aut, cre], John D. Storey [aut]
Maintainer:	Alejandro Ochoa <alejandro.ochoa at duke.edu>
BugReports:	https://github.com/StoreyLab/popkin/issues
License:	GPL-3
URL:	https://github.com/StoreyLab/popkin/
NeedsCompilation:	no
Citation:	popkin citation info
Materials:	README, NEWS
CRAN checks:	popkin results

Documentation:

Reference manual:	popkin.html , popkin.pdf
Vignettes:	Estimate Kinship and FST under Arbitrary Population Structure with 'popkin' (source, R code)

Downloads:

Package source:	popkin_1.3.23.tar.gz
Windows binaries:	r-devel: popkin_1.3.23.zip, r-release: popkin_1.3.23.zip, r-oldrel: popkin_1.3.23.zip
macOS binaries:	r-release (arm64): popkin_1.3.23.tgz, r-oldrel (arm64): popkin_1.3.23.tgz, r-release (x86_64): popkin_1.3.23.tgz, r-oldrel (x86_64): popkin_1.3.23.tgz
Old sources:	popkin archive

Reverse dependencies:

Reverse suggests:

bnpsd, ggmix, simfam, simtrait

Linking:

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