Methods to detect genetic markers involved in biological
adaptation. 'pcadapt' provides statistical tools for outlier detection based on
Principal Component Analysis. Implements the method described in (Luu, 2016)
<doi:10.1111/1755-0998.12592> and later revised in (Privé, 2020)
<doi:10.1093/molbev/msaa053>.
| Version: |
4.4.0 |
| Imports: |
bigutilsr (≥ 0.3), data.table, ggplot2, magrittr, mmapcharr (≥ 0.3), Rcpp (≥ 0.12.8), RSpectra |
| LinkingTo: |
mmapcharr, Rcpp, rmio |
| Suggests: |
plotly, shiny, spelling, testthat, vcfR |
| Published: |
2024-09-24 |
| DOI: |
10.32614/CRAN.package.pcadapt |
| Author: |
Keurcien Luu [aut],
Michael Blum [aut],
Florian Privé [aut, cre],
Eric Bazin [ctb],
Nicolas Duforet-Frebourg [ctb] |
| Maintainer: |
Florian Privé <florian.prive.21 at gmail.com> |
| BugReports: |
https://github.com/bcm-uga/pcadapt/issues |
| License: |
GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: |
https://github.com/bcm-uga/pcadapt |
| NeedsCompilation: |
yes |
| Language: |
en-US |
| Citation: |
pcadapt citation info |
| Materials: |
README NEWS |
| CRAN checks: |
pcadapt results |