mt 2.0-1.1:
pca.outlier: add prefix to ellipse to avoid conflict
with package car.
mt 2.0-1.2:
corrgram.circle and corrgram.ellipse: move
‘scales’ into argument list.
mt 2.0-1.3:
cl.auc: adjust auc:
if (auc < 0.5) auc <- 1 - auc
mt 2.0-1.4: (14-05-2012)
accest: Fix bugs and add more output.
mt 2.0-1.5: (16-05-2012)
cl.roc: change output and fix bugs.
mt 2.0-1.6: (19-05-2012)
cl.roc: add output of positive level.cl.perf: add confusion matrix, Kappa and positive
outputs.
mt 2.0-1.7: (21-05-2012)
plsc: minor changes for returned component pls.out so
that R2 can be applied.plslda: minor changes for returned component pls.out so
that R2 can be applied.
mt 2.0-1.8: (22-05-2012)
mt 2.0-1.9: (22-05-2013)
df.summ: add dots argument and modify an user-defined
function.
mt 2.0-1.10: (09-01-2014)
stats.vec and stats.mat: summarising two
groups stats, such as p-values.fs.cl.2, perf and perf.aam:
internal functions (21-01-2014).
mt 2.0-1.11: (22-01-2014)
- re-write
shrink.list
- add
proprec.auto as hidden function and tidy up
mt 2.0-1.12: (07-08-2014)
- fix bug in
pval.reject: add na.rm = TRUE
- change in
.grpplot: remove xlab and ylab inside.
mt 2.0-1.13: (10-06-2015)
- two functions
mdsplot and mds_plot_wrap
for MDS plotting.
mt 2.0-1.14: (16-07-2015)
- Re-write two functions for ellipse:
panel.elli and
panel.elli.1
- Provide
panel.outl for labelling data points outside
ellipse. They can be considered as outliers.
mt 2.0-1.15: (19-11-2015)
.path.package is defunct so use
path.package instead in csv2xls.- Use
pls:::coef.mvr replace coef.mvr since
it hides in the new version of ‘pls’.
mt 2.0-1.16: (30-11-2015)
- Add log2 fold-change for
stats.mat and
stats.vec.
- Add adjusted p-values for
stats.mat only.
- Provide documents for
pca.outlier and
pca.outlier.1. The former is lattice version and the later
is the basic graphics version.
mt 2.0-1.17: (26-01-2016)
- Remove returned values of “direction” in
stats.vec and
stats.mat. So the results are numeric, not character.
mt 2.0-1.18: (06-11-2021)
- Replace
melt and ddply with base R
functions. So no need to load two packages reshape and
plyr.
- Move out some un-documented functions.
- Change CHANGELOG as NEWS.md
- Move packages from Depends to Imports in DESCRIPTION
- Spell check on R scripts using RStudio
mt 2.0-1.19: (31-01-2022)
- no changes but test against new version of
randomForest
4.7.1 as requested.
mt 2.0-1.20: (12-02-2024)
- No changes but new R version of R complains S3 method in RD file. So
change the dot as underscore for:
pca_plot_wrap,
mds_plot_wrap, lda_plot_wrap,
lda_plot_wrap_1 and pls_plot_wrap. (probably
.plot is the problem)
mt 2.0-1.21: (11-08-2025)
- No changes but edit RD files with package anchors for
lattice and latticeExtra. Also change author
item in DESCRIPTION.