metaprotr: Metaproteomics Post-Processing Analysis
Set of tools for descriptive analysis of metaproteomics data generated from high-throughput
mass spectrometry instruments. These tools allow to cluster peptides and proteins abundance,
expressed as spectral counts, and to manipulate them in groups of metaproteins. This information
can be represented using multiple visualization functions to portray the global metaproteome
landscape and to differentiate samples or conditions, in terms of abundance of metaproteins,
taxonomic levels and/or functional annotation. The provided tools allow to implement flexible
analytical pipelines that can be easily applied to studies interested in metaproteomics analysis.
| Version: |
1.2.2 |
| Depends: |
R (≥ 3.5.0) |
| Imports: |
ade4, dendextend, dplyr, ggforce, ggrepel, reshape2, stringr, tidyverse |
| Published: |
2021-02-05 |
| DOI: |
10.32614/CRAN.package.metaprotr |
| Author: |
Aaron Millan-Oropeza [aut, cre],
Catherine Juste [aut, ctb],
Ariane Bassignani [aut, ctb],
Céline Henry [aut, ctb] |
| Maintainer: |
Aaron Millan-Oropeza <aaron.ibt at gmail.com> |
| License: |
GPL-3 |
| URL: |
https://forgemia.inra.fr/pappso/metaprotr |
| NeedsCompilation: |
no |
| Materials: |
README, NEWS |
| CRAN checks: |
metaprotr results |
Documentation:
Downloads:
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