limorhyde2 0.1.0
- Changed default for credible interval mass to 0.9.
limorhyde2 0.0.13
- Fixed
getExpectedMeas() for single condition and no
covariates.
limorhyde2 0.0.12
- Added
isAlreadyInParallel() function that checks if you
are already running something in parallel.
- Added check to
getRhythmStats() to prevent running in
parallel if already in parallel.
limorhyde2 0.0.11
- Fixed
mergeMeasMeta() for RNA-seq data.
limorhyde2 0.0.10
- Matched styling to lab standards.
limorhyde2 0.0.9
- Enabled spline fit with fewer knots and customizable degree.
limorhyde2 0.0.8
- Matched style to lab standard.
limorhyde2 0.0.7
- Made data smaller and examples faster.
limorhyde2 0.0.6
- Switched to using updated
ashr from CRAN.
limorhyde2 0.0.4
- Added more stringent checking for correspondence between
measurements matrix and metadata.
limorhyde2 0.0.3
- Made
mash silent.
- Added checking for parallel backend, to avoid warning messages.
limorhyde2 0.0.2
- Moved data to data/, to make examples and vignettes simpler.
- Added examples.
limorhyde2 0.0.1
- Updated vignette for analyzing RNA-seq data.
limorhyde2 0.0.0.9033
- Renamed
mean_value to mesor and added
differential rhythm statistics for mean mesor and mean amp.
limorhyde2 0.0.0.9032
- Added differential rhythm statistic
diff_rhy_dist.
limorhyde2 0.0.0.9031
- Cleaned up calculation of credible intervals for rhythm
amplitudes.
limorhyde2 0.0.0.9030
- Updated model parameterization and mashing to treat all conditions
fairly.
limorhyde2 0.0.0.9029
- Updated calculation of credible intervals for rhythm
amplitudes.
limorhyde2 0.0.0.9028
- Added vignette for RNA-seq data.
limorhyde2 0.0.0.9027
- Added ability to fit models using
DESeq2.
limorhyde2 0.0.0.9026
- Made calculation of rms-based stats optional.
- Simplified tests to use snapshotting.
limorhyde2 0.0.0.9025
- Changed
assertLogical() to assertFlag()
for checking inputs.
limorhyde2 0.0.0.9024
- Fixed vignette building on Windows machines
limorhyde2 0.0.0.9023
- Fixed factor weirdness between R versions
limorhyde2 0.0.0.9022
- Output for
getDiffRhythmStats() now includes all pairs
of conditions by default
limorhyde2 0.0.0.9021
- Fixed bug so getDiffRhythmStats uses all shifted models
limorhyde2 0.0.0.9020
- Replaced
globalVariables() with assigning variables to
NULL in each function
limorhyde2 0.0.0.9019
- Clarified wording in vignettes
limorhyde2 0.0.0.9018
- Added function to merge measurements and metadata
- Added vignettes
limorhyde2 0.0.0.9017
- Fixed bug in getStatsIntervals
limorhyde2 0.0.0.9016
- Cleaned up logic around nKnots for cosinor
- Fixed setting attributes for data.tables
- Fixed input check in getDiffRhythmStats
limorhyde2 0.0.0.9015
- Revamped input checking to use the checkmate package