incidence: Compute, Handle, Plot and Model Incidence of Dated Events

Provides functions and classes to compute, handle and visualise incidence from dated events for a defined time interval. Dates can be provided in various standard formats. The class 'incidence' is used to store computed incidence and can be easily manipulated, subsetted, and plotted. In addition, log-linear models can be fitted to 'incidence' objects using 'fit'. This package is part of the RECON (<https://www.repidemicsconsortium.org/>) toolkit for outbreak analysis.

Version:	1.7.5
Imports:	ggplot2 (≥ 3.3.2), aweek (≥ 0.2.0)
Suggests:	magrittr, outbreaks, testthat, vdiffr, knitr, rmarkdown, scales, cowplot
Published:	2024-05-31
DOI:	10.32614/CRAN.package.incidence
Author:	Thibaut Jombart [aut], Zhian N. Kamvar [aut], Rich FitzJohn [aut], Tim Taylor [cre], Jun Cai [ctb], Sangeeta Bhatia [ctb], Jakob Schumacher [ctb], Juliet R.C. Pulliam [ctb]
Maintainer:	Tim Taylor <tim.taylor at hiddenelephants.co.uk>
BugReports:	https://github.com/reconhub/incidence/issues
License:	MIT + file LICENSE
URL:	https://www.repidemicsconsortium.org/incidence/
NeedsCompilation:	no
Citation:	incidence citation info
Materials:	NEWS
In views:	Epidemiology
CRAN checks:	incidence results

Documentation:

Reference manual:	incidence.pdf
Vignettes:	Conversions Customise graphics Incidence class Incidence fit class Overview

Downloads:

Package source:	incidence_1.7.5.tar.gz
Windows binaries:	r-devel: incidence_1.7.5.zip, r-release: incidence_1.7.5.zip, r-oldrel: incidence_1.7.5.zip
macOS binaries:	r-release (arm64): incidence_1.7.5.tgz, r-oldrel (arm64): incidence_1.7.5.tgz, r-release (x86_64): incidence_1.7.5.tgz, r-oldrel (x86_64): incidence_1.7.5.tgz
Old sources:	incidence archive

Reverse dependencies:

Reverse imports:	epiCo, EpiEstim, projections
Reverse suggests:	earlyR, epitrix, outbreaks

Linking:

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