Classes and methods for handling genetic data. Includes classes to represent genotypes and haplotypes at single markers up to multiple markers on multiple chromosomes. Function include allele frequencies, flagging homo/heterozygotes, flagging carriers of certain alleles, estimating and testing for Hardy-Weinberg disequilibrium, estimating and testing for linkage disequilibrium, ...
| Version: | 1.3.8.1.3 |
| Depends: | combinat, gdata, gtools, MASS, mvtnorm |
| Published: | 2021-03-01 |
| DOI: | 10.32614/CRAN.package.genetics |
| Author: | Gregory Warnes, with contributions from Gregor Gorjanc, Friedrich Leisch, and Michael Man. |
| Maintainer: | Gregory Warnes <greg at warnes.net> |
| License: | GPL-2 | GPL-3 [expanded from: GPL] |
| NeedsCompilation: | no |
| Materials: | NEWS ChangeLog |
| CRAN checks: | genetics results |
| Reference manual: | genetics.pdf |
| Package source: | genetics_1.3.8.1.3.tar.gz |
| Windows binaries: | r-devel: genetics_1.3.8.1.3.zip, r-release: genetics_1.3.8.1.3.zip, r-oldrel: genetics_1.3.8.1.3.zip |
| macOS binaries: | r-release (arm64): genetics_1.3.8.1.3.tgz, r-oldrel (arm64): genetics_1.3.8.1.3.tgz, r-release (x86_64): genetics_1.3.8.1.3.tgz, r-oldrel (x86_64): genetics_1.3.8.1.3.tgz |
| Old sources: | genetics archive |
| Reverse depends: | luca |
| Reverse imports: | geneHapR, GeneticsPed, pedtricks, PopGenReport |
| Reverse suggests: | gap |
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