A local haplotyping visualization toolbox to capture major patterns
of co-inheritance between clusters of linked variants, whilst connecting findings
to phenotypic and demographic traits across individuals. 'crosshap' enables users
to explore and understand genomic variation across a trait-associated region.
For an example of successful local haplotype analysis, see Marsh et al. (2022)
<doi:10.1007/s00122-022-04045-8>.
| Version: |
1.4.0 |
| Depends: |
R (≥ 4.00) |
| Imports: |
cli, clustree, data.table, dbscan, dplyr, ggdist, ggplot2, ggpp, gridExtra, gtable, magrittr, patchwork, rlang, scales, tibble, tidyr |
| Suggests: |
covr, knitr, rmarkdown, testthat (≥ 3.0.0), umap, vdiffr |
| Published: |
2024-03-31 |
| DOI: |
10.32614/CRAN.package.crosshap |
| Author: |
Jacob Marsh  [aut,
cre],
Brady Johnston
[aut],
Jakob Petereit
[aut] |
| Maintainer: |
Jacob Marsh <jake.marsh at live.com.au> |
| BugReports: |
https://github.com/jacobimarsh/crosshap/issues |
| License: |
MIT + file LICENSE |
| URL: |
https://jacobimarsh.github.io/crosshap/ |
| NeedsCompilation: |
no |
| Materials: |
README |
| CRAN checks: |
crosshap results |