camtrapdp 0.6.0
- camtrapdp now relies on R >= 4.1.0 and uses base pipes
(
|> rather than %>%) (#209).
- camtrapdp now relies on
{frictionless} >= 1.3.0
(#217).
camtrapdp 0.5.0
read_camtrapdp() now upgrades datasets to Camtrap DP
1.0.2 (#183) and provides help for unsupported versions (#198).write_camtrapdp() now removes properties with
NA values from x$taxonomic and
x$contributors which caused datapackage.json
to be invalid (#186).write_eml()’s derived paragraph is now formatted as
DocBook rather than HTML (#188).
camtrapdp 0.4.0
Reading and writing data
read_camtrapdp() now updates (or creates) the spatial,
temporal and taxonomic scope in the metadata based on the data (#130,
#164).read_camtrapdp() now upgrades datasets to Camtrap DP
1.0.1. The internal function convert() has been renamed to
upgrade() (#113).- New
write_camtrapdp() writes a Camera Trap Data Package
to disk as a datapackage.json and CSV files (#137). This
means you can now read, update and write Camtrap DP datasets.
Accessing data
- New
contributors() returns a tibble with contributors
(#140).
- New
individuals() returns a data frame with unique
individuals (#149).
taxa() now removes duplicates (#130).
Filtering data
filter_deployments() and
deployments()<- now update the spatial, temporal and
taxonomic scope in the metadata based on the returned data (#100,
#132).filter_observations(), filter_media(),
media()<- and observations()<- now
update the taxonomic scope in the metadata based on the returned data
(#89, #100, #130).
write_dwc() now adds dwc:identificationVerificationStatus
for observations classified by humans with 100% certainty (#158).write_dwc() now allows to create occurrences from
media-based observations (#172).- New
write_eml() transforms Camtrap DP metadata to EML
(#99). This function is used by GBIF to create metadata for a dataset
page.
- New
merge_camtrapdp() allows to merge two datasets
(#112). This can be useful to combine data from multiple studies.
- New
round_coordinates() allows to fuzzy/generalize
location information by rounding deployment latitude and
longitude. It also updates
coordinateUncertainty in the deployments and
coordinatePrecision and spatial scope in the metadata
(#106).
- New
shift_time() allows to shift/correct date-times in
data and metadata for specified deploymentIDs and duration (#108).
- New
update_taxon() allows to update taxonomic
information in data and metadata (#159).
Miscellaneous
- camtrapdp now relies on (and is tested for) R version 3.6.0 or
higher (#138).
- Internal function
build_taxa() is renamed to
taxonomic() (#130).
camtrapdp 0.3.1
camtrapdp 0.3.0
- New function
print() prints a human-readable summary of
the Camera Trap Data Package (#8).
- Fix
fieldsEnclosedBy issue in meta.xml, so
GBIF occurrence processing correctly handles commas in fields
(#95).
- Fix CRAN note (#94).
camtrapdp 0.2.1
- First release on CRAN. 🎉
write_dwc() no longer writes to "." by
default, since this is not allowed by CRAN policies. The user needs to
explicitly define a directory (#79).
camtrapdp 0.2.0
- New function
read_camtrapdp() reads data files from a
Camtrap DP into memory (#9). It will make the data easier to use, by
assigning taxonomic information (found in the metadata) to the
observations and eventIDs (found in the observations) to
the media (#37).
- New accessor functions
deployments(),
media() and observations() return a data frame
with the deployments, media and observations respectively (#29). These
functions also have an assignment equivalent (#50).
- New accessor functions
locations(),
events() and taxa() return a data frame with
unique locations, events and taxa respectively (#22, #57, #17).
- New functions
filter_deployments(),
filter_observations() and filter_media() allow
to filter data. They work similarly to {dplyr}’s
filter() (#23).
- New function
write_dwc() transforms a Camera Trap Data
Package to a Darwin Core Archive (#55).
- New function
example_package() returns the latest
Camtrap DP example dataset and caches the result (#24, #67).
- New function
version() allows to get the version of a
camtrapdp object.
- New internal function
check_camtrapdp() validates a
camtrapdp object (#34).
- New internal function
convert() converts camtrapdp
objects to the latest version. This function is currently not used, as
the only supported version is Camtrap DP 1.0 (#9).
{dplyr}’s pipe (%>%) is included in
NAMESPACE, so you don’t have to load dplyr (or magrittr) to use it
(#56). %>% and .data are imported at
package level, so they can be used in functions without namespace
(#37).