Implementation of Sequential BATTing (bootstrapping and aggregating of thresholds from trees) for developing threshold-based multivariate (prognostic/predictive) biomarker signatures. Variable selection is automatically built-in. Final signatures are returned with interaction plots for predictive signatures. Cross-validation performance evaluation and testing dataset results are also output. Detail algorithms are described in Huang et al (2017) <doi:10.1002/sim.7236>.
| Version: | 0.12 |
| Imports: | glmnet, MASS, rpart, survival, Matrix, ggplot2 |
| Published: | 2024-02-03 |
| DOI: | 10.32614/CRAN.package.SubgrpID |
| Author: | Xin Huang [aut, cre, cph], Yan Sun [aut], Saptarshi Chatterjee [aut], Paul Trow [aut] |
| Maintainer: | Xin Huang <xin.huang at abbvie.com> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | no |
| CRAN checks: | SubgrpID results |
| Reference manual: | SubgrpID.pdf |
| Package source: | SubgrpID_0.12.tar.gz |
| Windows binaries: | r-devel: SubgrpID_0.12.zip, r-release: SubgrpID_0.12.zip, r-oldrel: SubgrpID_0.12.zip |
| macOS binaries: | r-devel (arm64): SubgrpID_0.12.tgz, r-release (arm64): SubgrpID_0.12.tgz, r-oldrel (arm64): SubgrpID_0.12.tgz, r-devel (x86_64): SubgrpID_0.12.tgz, r-release (x86_64): SubgrpID_0.12.tgz, r-oldrel (x86_64): SubgrpID_0.12.tgz |
| Old sources: | SubgrpID archive |
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