QuICSeedR: Analyze Data for Fluorophore-Assisted Seed Amplification Assays

A toolkit for analysis and visualization of data from fluorophore-assisted seed amplification assays, such as Real-Time Quaking-Induced Conversion (RT-QuIC) and Fluorophore-Assisted Protein Misfolding Cyclic Amplification (PMCA). 'QuICSeedR' addresses limitations in existing software by automating data processing, supporting large-scale analysis, and enabling comparative studies of analysis methods. It incorporates methods described in Henderson et al. (2015) <doi:10.1099/vir.0.069906-0>, Li et al. (2020) <doi:10.1038/s41598-021-96127-8>, Rowden et al. (2023) <doi:10.3390/pathogens12020309>, Haley et al. (2013) <doi:10.1371/journal.pone.0081488>, and Mair and Wilcox (2020) <doi:10.3758/s13428-019-01246-w>. Please refer to the original publications for details.

Version:	0.1.2
Depends:	R (≥ 4.1.0)
Imports:	WRS2, magrittr, graphics, stats, ggplot2, methods, dplyr, tidyr, tidyselect, rlang, readxl
Suggests:	testthat (≥ 3.0.0)
Published:	2024-09-02
DOI:	10.32614/CRAN.package.QuICSeedR
Author:	Manci Li [aut, cre]
Maintainer:	Manci Li <li000021 at umn.edu>
License:	GPL-3 | file LICENSE
Copyright:	Manci Li
NeedsCompilation:	no
Materials:	README
CRAN checks:	QuICSeedR results

Documentation:

Reference manual:

QuICSeedR.pdf

Downloads:

Package source:	QuICSeedR_0.1.2.tar.gz
Windows binaries:	r-devel: QuICSeedR_0.1.2.zip, r-release: QuICSeedR_0.1.2.zip, r-oldrel: QuICSeedR_0.1.2.zip
macOS binaries:	r-release (arm64): QuICSeedR_0.1.2.tgz, r-oldrel (arm64): QuICSeedR_0.1.2.tgz, r-release (x86_64): QuICSeedR_0.1.2.tgz, r-oldrel (x86_64): QuICSeedR_0.1.2.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=QuICSeedR to link to this page.