PathoFMPred 0.1.0
First CRAN submission candidate.
- Fit portable cancer-specific PLS regression and PLS-LDA collections
from user-supplied pathology representation and outcome tables.
- Link tables by a required patient ID, pool repeated feature rows by
mean or median, and report unmatched IDs and endpoint-specific
missingness.
- Apply locally fitted or separately authorized model collections to
new representation features. Research reports distinguish uncalibrated
binary scores from probabilities and identify limited-evidence
models.
- Provide a vignette, reference manual and tests for building and
using collections from TITAN, Giga-SSL, Prov-GigaPath or future
representations.
- Distribute source code only. No pretrained encoders, embeddings,
fitted model collections, patient-level data or research atlas registry
are bundled. Optional downloads require an explicit user-supplied source
and SHA-256 checksum and never run during installation or package
checks.