| Title: | Image-Based Identification of Color Based on Rayner (1970) Terminology and Known Fungal Pigments |
| Version: | 0.2.0 |
| Description: | Image-based color matching using the "Mycological Colour Chart" by Rayner (1970, ISBN:9780851980263) and its associated fungal pigments. This package will assist mycologists in identifying color during morphological analysis. |
| License: | GPL-2 |
| Encoding: | UTF-8 |
| Imports: | colordistance, readxl |
| RoxygenNote: | 7.2.3 |
| Maintainer: | Chester Deocaris <ccdeocaris@pup.edu.ph> |
| Repository: | CRAN |
| NeedsCompilation: | no |
| Packaged: | 2024-01-09 13:48:06 UTC; nina |
| Author: | Niña Rose Zapanta 
[aut],
Rhenz Hannah Santos
[aut],
Jericho Ivan Pineda
[aut],
Lourdes Alvarez
[aut, ths],
Chester Deocaris
[aut, ths, cre] |
| Suggests: | testthat (≥ 3.0.0) |
| Config/testthat/edition: | 3 |
| Date/Publication: | 2024-01-09 14:00:05 UTC |
fungalpigments.LAB
Description
Generates results for associated fungal pigments / class of compounds based on the CIELAB color matches
Usage
fungalpigments.LAB(fungi, distance.method = "euclidean")
Arguments
fungi |
Image of fungi in transparent background |
distance.method |
Metrics for color-matching ("euclidean", or "chisq") |
Value
Fungal pigments, 3D LAB plot, color histogram
Author(s)
Niña Rose E. Zapanta
Jericho Ivan Pineda
Rhenz Hannah R. Santos
Lourdes V. Alvarez
Chester C. Deocaris
References
Rayner, R. (1970, ISBN:9780851980263). Mycological Colour Chart. UK: Commonwealth Mycological Insitute and British Mycological Society.
Conlan, X. A., Kalra. R., and Goel M. (2020) <doi:10.3389/fchem.2020.00369> Fungi as a Potential Source of Pigments: Harnessing Filamentous Fungi. Front. Chem, 8:369.
Cejpek, K. and Valisek, J. (2011) <doi:10.17221/524/2010-cjfs> Pigments of Higher Fungi: A review. Czech J. Food Sci., 29:87-102.
Examples
fungalpigments.LAB(system.file("fungi.png", package = "PUPMCR"))
## Not run: fungalpigments.LAB("fungi_image_format")
fungalpigments.RGB
Description
Generates results for associated fungal pigments / class of compounds based on the RGB color matches
Usage
fungalpigments.RGB(fungi, distance.method = "euclidean")
Arguments
fungi |
Image of fungi in transparent background |
distance.method |
Metrics for color-matching ("euclidean", or "chisq") |
Value
Fungal pigments, 3D RGB plot, color histogram
Author(s)
Niña Rose E. Zapanta
Jericho Ivan Pineda
Rhenz Hannah R. Santos
Lourdes V. Alvarez
Chester C. Deocaris
References
Rayner, R. (1970, ISBN:9780851980263). Mycological Colour Chart. UK: Commonwealth Mycological Insitute and British Mycological Society.
Conlan, X. A., Kalra. R., and Goel M. (2020) <doi:10.3389/fchem.2020.00369> Fungi as a Potential Source of Pigments: Harnessing Filamentous Fungi. Front. Chem, 8:369.
Cejpek, K. and Valisek, J. (2011) <doi:10.17221/524/2010-cjfs> Pigments of Higher Fungi: A review. Czech J. Food Sci., 29:87-102.
Examples
fungalpigments.RGB(system.file("fungi.png", package = "PUPMCR"))
## Not run: fungalpigments.RGB("fungi_image_format")
hue.LAB
Description
Generates results for hue groups based on the CIELAB color matches
Usage
hue.LAB(fungi, distance.method = "euclidean")
Arguments
fungi |
Image of fungi in transparent background |
distance.method |
Metrics for color-matching ("euclidean", or "chisq") |
Value
Hue groups, 3D LAB plot, color histogram
Author(s)
Niña Rose E. Zapanta
Jericho Ivan Pineda
Rhenz Hannah R. Santos
Lourdes V. Alvarez
Chester C. Deocaris
References
Rayner, R. (1970, ISBN:9780851980263). Mycological Colour Chart. UK: Commonwealth Mycological Insitute and British Mycological Society.
Conlan, X. A., Kalra. R., and Goel M. (2020) <doi:10.3389/fchem.2020.00369> Fungi as a Potential Source of Pigments: Harnessing Filamentous Fungi. Front. Chem, 8:369.
Cejpek, K. and Valisek, J. (2011) <doi:10.17221/524/2010-cjfs> Pigments of Higher Fungi: A review. Czech J. Food Sci., 29:87-102.
Examples
hue.LAB(system.file("fungi.png", package = "PUPMCR"))
## Not run: hue.LAB("fungi_image_format")
hue.RGB
Description
Generates results for hue groups based on the RGB color matches
Usage
hue.RGB(fungi, distance.method = "euclidean")
Arguments
fungi |
Image of fungi in transparent background |
distance.method |
Metrics for color-matching ("euclidean", or "chisq") |
Value
Hue groups, 3D RGB plot, color histogram
Author(s)
Niña Rose E. Zapanta
Jericho Ivan Pineda
Rhenz Hannah R. Santos
Lourdes V. Alvarez
Chester C. Deocaris
References
Rayner, R. (1970, ISBN:9780851980263). Mycological Colour Chart. UK: Commonwealth Mycological Insitute and British Mycological Society.
Conlan, X. A., Kalra. R., and Goel M. (2020) <doi:10.3389/fchem.2020.00369> Fungi as a Potential Source of Pigments: Harnessing Filamentous Fungi. Front. Chem, 8:369.
Cejpek, K. and Valisek, J. (2011) <doi:10.17221/524/2010-cjfs> Pigments of Higher Fungi: A review. Czech J. Food Sci., 29:87-102.
Examples
hue.RGB(system.file("fungi.png", package = "PUPMCR"))
## Not run: hue.RGB("fungi_image_format")
raynercolor.LAB
Description
Generates results for color names from the CIELAB color space
Usage
raynercolor.LAB(fungi, distance.method = "euclidean")
Arguments
fungi |
Image of fungi in transparent background |
distance.method |
Metrics for color-matching ("euclidean", or "chisq") |
Value
Color names, 3D LAB plot, color histogram
Author(s)
Niña Rose E. Zapanta
Jericho Ivan Pineda
Rhenz Hannah R. Santos
Lourdes V. Alvarez
Chester C. Deocaris
References
Rayner, R. (1970, ISBN:9780851980263). Mycological Colour Chart. UK: Commonwealth Mycological Insitute and British Mycological Society.
Conlan, X. A., Kalra. R., and Goel M. (2020) <doi:10.3389/fchem.2020.00369> Fungi as a Potential Source of Pigments: Harnessing Filamentous Fungi. Front. Chem, 8:369.
Cejpek, K. and Valisek, J. (2011) <doi:10.17221/524/2010-cjfs> Pigments of Higher Fungi: A review. Czech J. Food Sci., 29:87-102.
Examples
raynercolor.LAB(system.file("fungi.png", package = "PUPMCR"))
## Not run: raynercolor.LAB("fungi_image_format")
raynercolor.RGB
Description
Generates results for color names from the RGB color space
Usage
raynercolor.RGB(fungi, distance.method = "euclidean")
Arguments
fungi |
Image of fungi in transparent background |
distance.method |
Metrics for color-matching ("euclidean", or "chisq") |
Value
Color names, 3D RGB plot, color histogram
Author(s)
Niña Rose E. Zapanta
Jericho Ivan Pineda
Rhenz Hannah R. Santos
Lourdes V. Alvarez
Chester C. Deocaris
References
Rayner, R. (1970, ISBN:9780851980263). Mycological Colour Chart. UK: Commonwealth Mycological Insitute and British Mycological Society.
Conlan, X. A., Kalra. R., and Goel M. (2020) <doi:10.3389/fchem.2020.00369> Fungi as a Potential Source of Pigments: Harnessing Filamentous Fungi. Front. Chem, 8:369.
Cejpek, K. and Valisek, J. (2011) <doi:10.17221/524/2010-cjfs> Pigments of Higher Fungi: A review. Czech J. Food Sci., 29:87-102.
Examples
raynercolor.RGB(system.file("fungi.png", package = "PUPMCR"))
## Not run: raynercolor.RGB("fungi_image_format")