OmicNavigator: Open-Source Software for 'Omic' Data Analysis and Visualization
A tool for interactive exploration of the results from 'omics' experiments to facilitate novel discoveries from high-throughput biology. The software includes R functions for the 'bioinformatician' to deposit study metadata and the outputs from statistical analyses (e.g. differential expression, enrichment). These results are then exported to an interactive JavaScript dashboard that can be interrogated on the user's local machine or deployed online to be explored by collaborators. The dashboard includes 'sortable' tables, interactive plots including network visualization, and fine-grained filtering based on statistical significance.
| Version: | 1.13.13 |
| Depends: | R (≥ 3.2.0) |
| Imports: | data.table (≥ 1.12.4), graphics, jsonlite, stats, tools, utils |
| Suggests: | faviconPlease, ggplot2, opencpu, plotly, tinytest (≥ 1.2.3), ttdo (≥ 0.0.6), UpSetR |
| Published: | 2023-08-25 |
| DOI: | 10.32614/CRAN.package.OmicNavigator |
| Author: | Terrence Ernst [aut] (Web application),
John Blischak 
[aut, cre],
Paul Nordlund [aut] (Web application),
Justin Moore [aut] (UpSet-related functions and web application),
Joe Dalen [aut] (Barcode functionality and web application),
Akshay Bhamidipati [aut] (Web application),
Brett Engelmann [aut],
Marco Curado [aut] (Improved plotting capabilities),
Joe LoGrasso [aut] (Support for plotly),
AbbVie Inc. [cph, fnd] |
| Maintainer: | John Blischak <jdblischak at gmail.com> |
| BugReports: | https://github.com/abbvie-external/OmicNavigator/issues |
| License: | MIT + file LICENSE |
| URL: | https://github.com/abbvie-external/OmicNavigator |
| NeedsCompilation: | no |
| Materials: | README NEWS |
| In views: | Omics |
| CRAN checks: | OmicNavigator results |
Documentation:
| Reference manual: | OmicNavigator.pdf |
| Vignettes: |
OmicNavigator API OmicNavigator User's Guide |
Downloads:
| Package source: | OmicNavigator_1.13.13.tar.gz |
| Windows binaries: | r-devel: OmicNavigator_1.13.13.zip, r-release: OmicNavigator_1.13.13.zip, r-oldrel: OmicNavigator_1.13.13.zip |
| macOS binaries: | r-release (arm64): OmicNavigator_1.13.13.tgz, r-oldrel (arm64): OmicNavigator_1.13.13.tgz, r-release (x86_64): OmicNavigator_1.13.13.tgz, r-oldrel (x86_64): OmicNavigator_1.13.13.tgz |
| Old sources: | OmicNavigator archive |
Linking:
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