Help for package Certara.R

Title:

Easily Install Pharmacometric Packages and Shiny Applications Developed by Certara

Version:

1.1.0

Description:

A convenient set of wrapper functions to install pharmacometric packages and Shiny applications developed by Certara PMX and Integrated Drug Development (iDD). The functions ensure the successful installation of packages from non-standard repositories.

URL:

https://github.com/certara/R-Certara

BugReports:

https://github.com/certara/R-Certara/issues

Depends:

R (≥ 4.0)

License:

LGPL-3

Encoding:

UTF-8

RoxygenNote:

7.2.3

Suggests:

knitr, rmarkdown

Imports:

batchtools (≥ 0.9.9), data.table, dplyr, DT, ggplot2, htmltools, jsonlite, magrittr, methods, plotly, reshape, remotes, rlang, shiny, shinyjs, shinyWidgets, shinymaterial, shinyjqui, sortable, ssh, utils, xml2

NeedsCompilation:

Packaged:

2023-12-14 17:56:43 UTC; jcraig

Author:

James Craig [aut, cre], Certara USA, Inc. [cph, fnd]

Maintainer:

James Craig <james.craig@certara.com>

Repository:

CRAN

Date/Publication:

2023-12-14 21:40:02 UTC

List all packages developed by Certara

Description

List all packages developed by Certara

Usage

certara_packages(
  include_self = FALSE,
  include_github = TRUE,
  include_JFROG_deps = FALSE
)

Arguments

include_self

Logical; Set to TRUE to include Certara.R

include_github

Logical; Set to TRUE to include packages only available on GitHub

include_JFROG_deps

Logical; Set to TRUE to include Certara package dependencies on Jfrog

Value

Character vector of package names

Examples

certara_packages()

Check Certara package versions

Description

Check Certara package versions

Usage

check_certara_package_versions(pkgs)

Arguments

pkgs

Character or character vector of package names. If missing, defaults to certara_packages()

Value

Named character vector indicating package version, NA is returned if Certara package is not installed

Examples

## Not run: 
check_certara_package_versions()

## End(Not run)

Check if Certara packages are installed

Description

Check if Certara packages are installed

Usage

check_installed_certara_packages(pkgs)

Arguments

pkgs

Character or character vector of package names. If missing, defaults to certara_packages()

Value

Named logical vector indicating whether Certara package is installed

Examples

## Not run: 
check_installed_certara_packages()

## End(Not run)

Install Certara packages

Description

A user friendly wrapper to easily install R packages and Shiny applications developed by Certara

Usage

install_certara_packages(
  CRAN_repo = "https://cloud.r-project.org",
  clean_install = FALSE,
  quiet = FALSE
)

Arguments

CRAN_repo

Character; The URL of a CRAN mirror which defaults to "https://cloud.r-project.org"

clean_install

Logical; Set to TRUE to remove all existing Certara packages prior to installing

quiet

Logical; Set to TRUE to suppress installation messages and reduce console output

Value

TRUE if all packages successfully install

Examples

## Not run: 
install_certara_packages()

## End(Not run)

Remove Certara packages

Description

A user friendly wrapper to easily remove R packages developed by Certara

Usage

remove_certara_packages()

Value

TRUE if all packages successfully removed

Examples

## Not run: 
remove_certara_packages()

## End(Not run)