Last updated on 2025-12-20 11:50:34 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.3.0 | 40.92 | 156.01 | 196.93 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.3.0 | 27.42 | 100.55 | 127.97 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.3.0 | 81.00 | 231.68 | 312.68 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 0.3.0 | 77.00 | 214.87 | 291.87 | ERROR | |
| r-devel-windows-x86_64 | 0.3.0 | 50.00 | 217.00 | 267.00 | OK | |
| r-patched-linux-x86_64 | 0.3.0 | 42.10 | 189.72 | 231.82 | OK | |
| r-release-linux-x86_64 | 0.3.0 | 37.31 | 191.40 | 228.71 | OK | |
| r-release-macos-arm64 | 0.3.0 | OK | ||||
| r-release-macos-x86_64 | 0.3.0 | 28.00 | 246.00 | 274.00 | OK | |
| r-release-windows-x86_64 | 0.3.0 | 48.00 | 208.00 | 256.00 | OK | |
| r-oldrel-macos-arm64 | 0.3.0 | OK | ||||
| r-oldrel-macos-x86_64 | 0.3.0 | 29.00 | 260.00 | 289.00 | OK | |
| r-oldrel-windows-x86_64 | 0.3.0 | 59.00 | 276.00 | 335.00 | OK |
Version: 0.3.0
Check: compiled code
Result: NOTE
File ‘rENA/libs/rENA.so’:
Found non-API call to R: ‘ATTRIB’
Compiled code should not call non-API entry points in R.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.3.0
Check: examples
Result: ERROR
Running examples in ‘rENA-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ena
> ### Title: Wrapper to generate, and optionally plot, an ENA model
> ### Aliases: ena
>
> ### ** Examples
>
> data(RS.data)
>
> rs = ena(
+ data = RS.data,
+ units = c("UserName","Condition", "GroupName"),
+ conversation = c("Condition","GroupName"),
+ codes = c('Data',
+ 'Technical.Constraints',
+ 'Performance.Parameters',
+ 'Client.and.Consultant.Requests',
+ 'Design.Reasoning',
+ 'Collaboration'),
+ window.size.back = 4,
+ print.plots = FALSE,
+ groupVar = "Condition",
+ groups = c("FirstGame", "SecondGame")
+ )
Error in `[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, :
attempt access index 12/12 in VECTOR_ELT
Calls: ena ... <Anonymous> -> accumulate.data -> [ -> [.data.table
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.3.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [24s/15s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(rENA)
Registered S3 method overwritten by 'rENA':
method from
as.matrix.ena.matrix tma
For the latest features and updates, install from https://cran.qe-libs.org
Attaching package: 'rENA'
The following object is masked from 'package:stats':
optimize
The following object is masked from 'package:methods':
show
The following object is masked from 'package:base':
units
>
> test_check("rENA")
Saving _problems/test-ena_group-19.R
Saving _problems/test-ena_wrapper-23.R
Saving _problems/test-piping-17.R
Saving _problems/test-set_creator-30.R
Saving _problems/test-set_creator-121.R
Saving _problems/test-table_subsetting-17.R
Saving _problems/test-verify_toy_data_2-87.R
Saving _problems/test-zero-networks-10.R
Saving _problems/test.connection.matrix-19.R
Saving _problems/test.ena.accumulate.data.file-75.R
Saving _problems/test.ena.accumulate.data.file-133.R
Saving _problems/test.ena.accumulate.data.file-161.R
Saving _problems/test.ena.accumulations-262.R
Saving _problems/test.ena.accumulations-365.R
Saving _problems/test.ena.make.set.old-137.R
[1] "Using custom rotation.set."
[1] "Using custom rotation.set."
Saving _problems/test.ena.use.cases-13.R
Saving _problems/test.util.classes-19.R
Saving _problems/test.util.matrices-17.R
Saving _problems/test.utils-17.R
Saving _problems/test.weighted.single.window-24.R
[ FAIL 20 | WARN 0 | SKIP 3 | PASS 113 ]
══ Skipped tests (3) ═══════════════════════════════════════════════════════════
• empty test (3): , 'test.weighted.single.window.R:34:1',
'test.weighted.single.window.R:51:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-ena_group.R:13:1'): (code run outside of `test_that()`) ────────
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 11/11 in VECTOR_ELT
Backtrace:
▆
1. └─rENA::ena(...) at test-ena_group.R:13:1
2. └─rENA:::ena.set.creator(...)
3. └─rENA::ena.accumulate.data(...)
4. └─data$process()
5. └─private$loadFile()
6. └─rENA:::accumulate.data(self)
7. ├─...[]
8. └─data.table:::`[.data.table`(...)
── Error ('test-ena_wrapper.R:17:3'): Verify group with single unit ────────────
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 11/11 in VECTOR_ELT
Backtrace:
▆
1. └─rENA::ena(...) at test-ena_wrapper.R:17:3
2. └─rENA:::ena.set.creator(...)
3. └─rENA::ena.accumulate.data(...)
4. └─data$process()
5. └─private$loadFile()
6. └─rENA:::accumulate.data(self)
7. ├─...[]
8. └─data.table:::`[.data.table`(...)
── Error ('test-piping.R:11:1'): (code run outside of `test_that()`) ───────────
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 11/11 in VECTOR_ELT
Backtrace:
▆
1. └─rENA::ena.accumulate.data(...) at test-piping.R:11:1
2. └─data$process()
3. └─private$loadFile()
4. └─rENA:::accumulate.data(self)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-set_creator.R:22:3'): verify warnings ──────────────────────────
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 12/12 in VECTOR_ELT
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test-set_creator.R:22:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─rENA:::ena.set.creator(...)
7. └─rENA::ena.accumulate.data(...)
8. └─data$process()
9. └─private$loadFile()
10. └─rENA:::accumulate.data(self)
11. ├─...[]
12. └─data.table:::`[.data.table`(...)
── Error ('test-set_creator.R:112:3'): verify messages ─────────────────────────
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 12/12 in VECTOR_ELT
Backtrace:
▆
1. ├─testthat::expect_message(...) at test-set_creator.R:112:3
2. │ └─testthat:::quasi_capture(enquo(object), label, capture_messages)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─rENA:::ena.set.creator(...)
7. └─rENA::ena.accumulate.data(...)
8. └─data$process()
9. └─private$loadFile()
10. └─rENA:::accumulate.data(self)
11. ├─...[]
12. └─data.table:::`[.data.table`(...)
── Error ('test-table_subsetting.R:11:3'): Remove rows from meta data ──────────
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 11/11 in VECTOR_ELT
Backtrace:
▆
1. └─rENA::ena(...) at test-table_subsetting.R:11:3
2. └─rENA:::ena.set.creator(...)
3. └─rENA::ena.accumulate.data(...)
4. └─data$process()
5. └─private$loadFile()
6. └─rENA:::accumulate.data(self)
7. ├─...[]
8. └─data.table:::`[.data.table`(...)
── Error ('test-verify_toy_data_2.R:82:1'): (code run outside of `test_that()`) ──
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 9/9 in VECTOR_ELT
Backtrace:
▆
1. └─rENA:::ena.accumulate.data.file(...) at test-verify_toy_data_2.R:82:1
2. └─data$process()
3. └─private$loadFile()
4. └─rENA:::accumulate.data(self)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-zero-networks.R:3:1'): (code run outside of `test_that()`) ─────
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 15/15 in VECTOR_ELT
Backtrace:
▆
1. └─rENA::ena.accumulate.data(...) at test-zero-networks.R:3:1
2. └─data$process()
3. └─private$loadFile()
4. └─rENA:::accumulate.data(self)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test.connection.matrix.R:13:1'): (code run outside of `test_that()`) ──
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 11/11 in VECTOR_ELT
Backtrace:
▆
1. └─rENA::ena(...) at test.connection.matrix.R:13:1
2. └─rENA:::ena.set.creator(...)
3. └─rENA::ena.accumulate.data(...)
4. └─data$process()
5. └─private$loadFile()
6. └─rENA:::accumulate.data(self)
7. ├─...[]
8. └─data.table:::`[.data.table`(...)
── Error ('test.ena.accumulate.data.file.R:70:3'): Accumulate weighted data. ───
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 9/9 in VECTOR_ELT
Backtrace:
▆
1. └─rENA:::ena.accumulate.data.file(...) at test.ena.accumulate.data.file.R:70:3
2. └─data$process()
3. └─private$loadFile()
4. └─rENA:::accumulate.data(self)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test.ena.accumulate.data.file.R:127:3'): Corrected adjacency.vectors equals manually corrected raw data (correction = log) ──
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 9/9 in VECTOR_ELT
Backtrace:
▆
1. └─rENA:::ena.accumulate.data.file(...) at test.ena.accumulate.data.file.R:127:3
2. └─data$process()
3. └─private$loadFile()
4. └─rENA:::accumulate.data(self)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test.ena.accumulate.data.file.R:161:3'): Simple forwarded metadata ──
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 8/8 in VECTOR_ELT
Backtrace:
▆
1. └─rENA:::ena.accumulate.data.file(...) at test.ena.accumulate.data.file.R:161:3
2. └─data$process()
3. └─private$loadFile()
4. └─rENA:::accumulate.data(self)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test.ena.accumulations.R:260:3'): Test accumulation with infinite windows ──
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 6/6 in VECTOR_ELT
Backtrace:
▆
1. └─rENA::ena.accumulate.data(...) at test.ena.accumulations.R:260:3
2. └─data$process()
3. └─private$loadFile()
4. └─rENA:::accumulate.data(self)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test.ena.accumulations.R:363:3'): Test forward windows ──────────────
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 6/6 in VECTOR_ELT
Backtrace:
▆
1. └─rENA::ena.accumulate.data(...) at test.ena.accumulations.R:363:3
2. └─data$process()
3. └─private$loadFile()
4. └─rENA:::accumulate.data(self)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test.ena.make.set.old.R:131:3'): Old sets are the same as the new ones ──
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 21/21 in VECTOR_ELT
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test.ena.make.set.old.R:131:3
2. │ └─base::withCallingHandlers(...)
3. └─rENA:::ena.accumulate.data.file(...)
4. └─data$process()
5. └─private$loadFile()
6. └─rENA:::accumulate.data(self)
7. ├─...[]
8. └─data.table:::`[.data.table`(...)
── Error ('test.ena.use.cases.R:7:1'): (code run outside of `test_that()`) ─────
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 14/14 in VECTOR_ELT
Backtrace:
▆
1. └─rENA::ena.accumulate.data(...) at test.ena.use.cases.R:7:1
2. └─data$process()
3. └─private$loadFile()
4. └─rENA:::accumulate.data(self)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test.util.classes.R:13:1'): (code run outside of `test_that()`) ─────
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 11/11 in VECTOR_ELT
Backtrace:
▆
1. └─rENA::ena(...) at test.util.classes.R:13:1
2. └─rENA:::ena.set.creator(...)
3. └─rENA::ena.accumulate.data(...)
4. └─data$process()
5. └─private$loadFile()
6. └─rENA:::accumulate.data(self)
7. ├─...[]
8. └─data.table:::`[.data.table`(...)
── Error ('test.util.matrices.R:11:1'): (code run outside of `test_that()`) ────
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 11/11 in VECTOR_ELT
Backtrace:
▆
1. └─rENA::ena(...) at test.util.matrices.R:11:1
2. └─rENA:::ena.set.creator(...)
3. └─rENA::ena.accumulate.data(...)
4. └─data$process()
5. └─private$loadFile()
6. └─rENA:::accumulate.data(self)
7. ├─...[]
8. └─data.table:::`[.data.table`(...)
── Error ('test.utils.R:11:1'): (code run outside of `test_that()`) ────────────
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 11/11 in VECTOR_ELT
Backtrace:
▆
1. └─rENA::ena(...) at test.utils.R:11:1
2. └─rENA:::ena.set.creator(...)
3. └─rENA::ena.accumulate.data(...)
4. └─data$process()
5. └─private$loadFile()
6. └─rENA:::accumulate.data(self)
7. ├─...[]
8. └─data.table:::`[.data.table`(...)
── Error ('test.weighted.single.window.R:21:3'): Verify binary/weighted accumulations with window > 1 are not equal ──
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 6/6 in VECTOR_ELT
Backtrace:
▆
1. └─rENA::ena.accumulate.data(...) at test.weighted.single.window.R:21:3
2. └─data$process()
3. └─private$loadFile()
4. └─rENA:::accumulate.data(self)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
[ FAIL 20 | WARN 0 | SKIP 3 | PASS 113 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.3.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [14s/12s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(rENA)
Registered S3 method overwritten by 'rENA':
method from
as.matrix.ena.matrix tma
For the latest features and updates, install from https://cran.qe-libs.org
Attaching package: 'rENA'
The following object is masked from 'package:stats':
optimize
The following object is masked from 'package:methods':
show
The following object is masked from 'package:base':
units
>
> test_check("rENA")
Saving _problems/test-ena_group-19.R
Saving _problems/test-ena_wrapper-23.R
Saving _problems/test-piping-17.R
Saving _problems/test-set_creator-30.R
Saving _problems/test-set_creator-121.R
Saving _problems/test-table_subsetting-17.R
Saving _problems/test-verify_toy_data_2-87.R
Saving _problems/test-zero-networks-10.R
Saving _problems/test.connection.matrix-19.R
Saving _problems/test.ena.accumulate.data.file-75.R
Saving _problems/test.ena.accumulate.data.file-133.R
Saving _problems/test.ena.accumulate.data.file-161.R
Saving _problems/test.ena.accumulations-262.R
Saving _problems/test.ena.accumulations-365.R
Saving _problems/test.ena.make.set.old-137.R
[1] "Using custom rotation.set."
[1] "Using custom rotation.set."
Saving _problems/test.ena.use.cases-13.R
Saving _problems/test.util.classes-19.R
Saving _problems/test.util.matrices-17.R
Saving _problems/test.utils-17.R
Saving _problems/test.weighted.single.window-24.R
[ FAIL 20 | WARN 0 | SKIP 3 | PASS 113 ]
══ Skipped tests (3) ═══════════════════════════════════════════════════════════
• empty test (3): , 'test.weighted.single.window.R:34:1',
'test.weighted.single.window.R:51:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-ena_group.R:13:1'): (code run outside of `test_that()`) ────────
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 11/11 in VECTOR_ELT
Backtrace:
▆
1. └─rENA::ena(...) at test-ena_group.R:13:1
2. └─rENA:::ena.set.creator(...)
3. └─rENA::ena.accumulate.data(...)
4. └─data$process()
5. └─private$loadFile()
6. └─rENA:::accumulate.data(self)
7. ├─...[]
8. └─data.table:::`[.data.table`(...)
── Error ('test-ena_wrapper.R:17:3'): Verify group with single unit ────────────
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 11/11 in VECTOR_ELT
Backtrace:
▆
1. └─rENA::ena(...) at test-ena_wrapper.R:17:3
2. └─rENA:::ena.set.creator(...)
3. └─rENA::ena.accumulate.data(...)
4. └─data$process()
5. └─private$loadFile()
6. └─rENA:::accumulate.data(self)
7. ├─...[]
8. └─data.table:::`[.data.table`(...)
── Error ('test-piping.R:11:1'): (code run outside of `test_that()`) ───────────
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 11/11 in VECTOR_ELT
Backtrace:
▆
1. └─rENA::ena.accumulate.data(...) at test-piping.R:11:1
2. └─data$process()
3. └─private$loadFile()
4. └─rENA:::accumulate.data(self)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-set_creator.R:22:3'): verify warnings ──────────────────────────
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 12/12 in VECTOR_ELT
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test-set_creator.R:22:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─rENA:::ena.set.creator(...)
7. └─rENA::ena.accumulate.data(...)
8. └─data$process()
9. └─private$loadFile()
10. └─rENA:::accumulate.data(self)
11. ├─...[]
12. └─data.table:::`[.data.table`(...)
── Error ('test-set_creator.R:112:3'): verify messages ─────────────────────────
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 12/12 in VECTOR_ELT
Backtrace:
▆
1. ├─testthat::expect_message(...) at test-set_creator.R:112:3
2. │ └─testthat:::quasi_capture(enquo(object), label, capture_messages)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─rENA:::ena.set.creator(...)
7. └─rENA::ena.accumulate.data(...)
8. └─data$process()
9. └─private$loadFile()
10. └─rENA:::accumulate.data(self)
11. ├─...[]
12. └─data.table:::`[.data.table`(...)
── Error ('test-table_subsetting.R:11:3'): Remove rows from meta data ──────────
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 11/11 in VECTOR_ELT
Backtrace:
▆
1. └─rENA::ena(...) at test-table_subsetting.R:11:3
2. └─rENA:::ena.set.creator(...)
3. └─rENA::ena.accumulate.data(...)
4. └─data$process()
5. └─private$loadFile()
6. └─rENA:::accumulate.data(self)
7. ├─...[]
8. └─data.table:::`[.data.table`(...)
── Error ('test-verify_toy_data_2.R:82:1'): (code run outside of `test_that()`) ──
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 9/9 in VECTOR_ELT
Backtrace:
▆
1. └─rENA:::ena.accumulate.data.file(...) at test-verify_toy_data_2.R:82:1
2. └─data$process()
3. └─private$loadFile()
4. └─rENA:::accumulate.data(self)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-zero-networks.R:3:1'): (code run outside of `test_that()`) ─────
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 15/15 in VECTOR_ELT
Backtrace:
▆
1. └─rENA::ena.accumulate.data(...) at test-zero-networks.R:3:1
2. └─data$process()
3. └─private$loadFile()
4. └─rENA:::accumulate.data(self)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test.connection.matrix.R:13:1'): (code run outside of `test_that()`) ──
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 11/11 in VECTOR_ELT
Backtrace:
▆
1. └─rENA::ena(...) at test.connection.matrix.R:13:1
2. └─rENA:::ena.set.creator(...)
3. └─rENA::ena.accumulate.data(...)
4. └─data$process()
5. └─private$loadFile()
6. └─rENA:::accumulate.data(self)
7. ├─...[]
8. └─data.table:::`[.data.table`(...)
── Error ('test.ena.accumulate.data.file.R:70:3'): Accumulate weighted data. ───
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 9/9 in VECTOR_ELT
Backtrace:
▆
1. └─rENA:::ena.accumulate.data.file(...) at test.ena.accumulate.data.file.R:70:3
2. └─data$process()
3. └─private$loadFile()
4. └─rENA:::accumulate.data(self)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test.ena.accumulate.data.file.R:127:3'): Corrected adjacency.vectors equals manually corrected raw data (correction = log) ──
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 9/9 in VECTOR_ELT
Backtrace:
▆
1. └─rENA:::ena.accumulate.data.file(...) at test.ena.accumulate.data.file.R:127:3
2. └─data$process()
3. └─private$loadFile()
4. └─rENA:::accumulate.data(self)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test.ena.accumulate.data.file.R:161:3'): Simple forwarded metadata ──
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 8/8 in VECTOR_ELT
Backtrace:
▆
1. └─rENA:::ena.accumulate.data.file(...) at test.ena.accumulate.data.file.R:161:3
2. └─data$process()
3. └─private$loadFile()
4. └─rENA:::accumulate.data(self)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test.ena.accumulations.R:260:3'): Test accumulation with infinite windows ──
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 6/6 in VECTOR_ELT
Backtrace:
▆
1. └─rENA::ena.accumulate.data(...) at test.ena.accumulations.R:260:3
2. └─data$process()
3. └─private$loadFile()
4. └─rENA:::accumulate.data(self)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test.ena.accumulations.R:363:3'): Test forward windows ──────────────
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 6/6 in VECTOR_ELT
Backtrace:
▆
1. └─rENA::ena.accumulate.data(...) at test.ena.accumulations.R:363:3
2. └─data$process()
3. └─private$loadFile()
4. └─rENA:::accumulate.data(self)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test.ena.make.set.old.R:131:3'): Old sets are the same as the new ones ──
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 21/21 in VECTOR_ELT
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test.ena.make.set.old.R:131:3
2. │ └─base::withCallingHandlers(...)
3. └─rENA:::ena.accumulate.data.file(...)
4. └─data$process()
5. └─private$loadFile()
6. └─rENA:::accumulate.data(self)
7. ├─...[]
8. └─data.table:::`[.data.table`(...)
── Error ('test.ena.use.cases.R:7:1'): (code run outside of `test_that()`) ─────
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 14/14 in VECTOR_ELT
Backtrace:
▆
1. └─rENA::ena.accumulate.data(...) at test.ena.use.cases.R:7:1
2. └─data$process()
3. └─private$loadFile()
4. └─rENA:::accumulate.data(self)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test.util.classes.R:13:1'): (code run outside of `test_that()`) ─────
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 11/11 in VECTOR_ELT
Backtrace:
▆
1. └─rENA::ena(...) at test.util.classes.R:13:1
2. └─rENA:::ena.set.creator(...)
3. └─rENA::ena.accumulate.data(...)
4. └─data$process()
5. └─private$loadFile()
6. └─rENA:::accumulate.data(self)
7. ├─...[]
8. └─data.table:::`[.data.table`(...)
── Error ('test.util.matrices.R:11:1'): (code run outside of `test_that()`) ────
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 11/11 in VECTOR_ELT
Backtrace:
▆
1. └─rENA::ena(...) at test.util.matrices.R:11:1
2. └─rENA:::ena.set.creator(...)
3. └─rENA::ena.accumulate.data(...)
4. └─data$process()
5. └─private$loadFile()
6. └─rENA:::accumulate.data(self)
7. ├─...[]
8. └─data.table:::`[.data.table`(...)
── Error ('test.utils.R:11:1'): (code run outside of `test_that()`) ────────────
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 11/11 in VECTOR_ELT
Backtrace:
▆
1. └─rENA::ena(...) at test.utils.R:11:1
2. └─rENA:::ena.set.creator(...)
3. └─rENA::ena.accumulate.data(...)
4. └─data$process()
5. └─private$loadFile()
6. └─rENA:::accumulate.data(self)
7. ├─...[]
8. └─data.table:::`[.data.table`(...)
── Error ('test.weighted.single.window.R:21:3'): Verify binary/weighted accumulations with window > 1 are not equal ──
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 6/6 in VECTOR_ELT
Backtrace:
▆
1. └─rENA::ena.accumulate.data(...) at test.weighted.single.window.R:21:3
2. └─data$process()
3. └─private$loadFile()
4. └─rENA:::accumulate.data(self)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
[ FAIL 20 | WARN 0 | SKIP 3 | PASS 113 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.3.0
Check: examples
Result: ERROR
Running examples in ‘rENA-Ex.R’ failed
The error most likely occurred in:
> ### Name: ena
> ### Title: Wrapper to generate, and optionally plot, an ENA model
> ### Aliases: ena
>
> ### ** Examples
>
> data(RS.data)
>
> rs = ena(
+ data = RS.data,
+ units = c("UserName","Condition", "GroupName"),
+ conversation = c("Condition","GroupName"),
+ codes = c('Data',
+ 'Technical.Constraints',
+ 'Performance.Parameters',
+ 'Client.and.Consultant.Requests',
+ 'Design.Reasoning',
+ 'Collaboration'),
+ window.size.back = 4,
+ print.plots = FALSE,
+ groupVar = "Condition",
+ groups = c("FirstGame", "SecondGame")
+ )
Error in `[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, :
attempt access index 12/12 in VECTOR_ELT
Calls: ena ... <Anonymous> -> accumulate.data -> [ -> [.data.table
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.3.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [27s/32s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(rENA)
Registered S3 method overwritten by 'rENA':
method from
as.matrix.ena.matrix tma
For the latest features and updates, install from https://cran.qe-libs.org
Attaching package: 'rENA'
The following object is masked from 'package:stats':
optimize
The following object is masked from 'package:methods':
show
The following object is masked from 'package:base':
units
>
> test_check("rENA")
Saving _problems/test-ena_group-19.R
Saving _problems/test-ena_wrapper-23.R
Saving _problems/test-piping-17.R
Saving _problems/test-set_creator-30.R
Saving _problems/test-set_creator-121.R
Saving _problems/test-table_subsetting-17.R
Saving _problems/test-verify_toy_data_2-87.R
Saving _problems/test-zero-networks-10.R
Saving _problems/test.connection.matrix-19.R
Saving _problems/test.ena.accumulate.data.file-75.R
Saving _problems/test.ena.accumulate.data.file-133.R
Saving _problems/test.ena.accumulate.data.file-161.R
Saving _problems/test.ena.accumulations-262.R
Saving _problems/test.ena.accumulations-365.R
Saving _problems/test.ena.make.set.old-137.R
[1] "Using custom rotation.set."
[1] "Using custom rotation.set."
Saving _problems/test.ena.use.cases-13.R
Saving _problems/test.util.classes-19.R
Saving _problems/test.util.matrices-17.R
Saving _problems/test.utils-17.R
Saving _problems/test.weighted.single.window-24.R
[ FAIL 20 | WARN 0 | SKIP 3 | PASS 113 ]
══ Skipped tests (3) ═══════════════════════════════════════════════════════════
• empty test (3): , 'test.weighted.single.window.R:34:1',
'test.weighted.single.window.R:51:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-ena_group.R:13:1'): (code run outside of `test_that()`) ────────
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 11/11 in VECTOR_ELT
Backtrace:
▆
1. └─rENA::ena(...) at test-ena_group.R:13:1
2. └─rENA:::ena.set.creator(...)
3. └─rENA::ena.accumulate.data(...)
4. └─data$process()
5. └─private$loadFile()
6. └─rENA:::accumulate.data(self)
7. ├─...[]
8. └─data.table:::`[.data.table`(...)
── Error ('test-ena_wrapper.R:17:3'): Verify group with single unit ────────────
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 11/11 in VECTOR_ELT
Backtrace:
▆
1. └─rENA::ena(...) at test-ena_wrapper.R:17:3
2. └─rENA:::ena.set.creator(...)
3. └─rENA::ena.accumulate.data(...)
4. └─data$process()
5. └─private$loadFile()
6. └─rENA:::accumulate.data(self)
7. ├─...[]
8. └─data.table:::`[.data.table`(...)
── Error ('test-piping.R:11:1'): (code run outside of `test_that()`) ───────────
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 11/11 in VECTOR_ELT
Backtrace:
▆
1. └─rENA::ena.accumulate.data(...) at test-piping.R:11:1
2. └─data$process()
3. └─private$loadFile()
4. └─rENA:::accumulate.data(self)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-set_creator.R:22:3'): verify warnings ──────────────────────────
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 12/12 in VECTOR_ELT
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test-set_creator.R:22:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─rENA:::ena.set.creator(...)
7. └─rENA::ena.accumulate.data(...)
8. └─data$process()
9. └─private$loadFile()
10. └─rENA:::accumulate.data(self)
11. ├─...[]
12. └─data.table:::`[.data.table`(...)
── Error ('test-set_creator.R:112:3'): verify messages ─────────────────────────
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 12/12 in VECTOR_ELT
Backtrace:
▆
1. ├─testthat::expect_message(...) at test-set_creator.R:112:3
2. │ └─testthat:::quasi_capture(enquo(object), label, capture_messages)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─rENA:::ena.set.creator(...)
7. └─rENA::ena.accumulate.data(...)
8. └─data$process()
9. └─private$loadFile()
10. └─rENA:::accumulate.data(self)
11. ├─...[]
12. └─data.table:::`[.data.table`(...)
── Error ('test-table_subsetting.R:11:3'): Remove rows from meta data ──────────
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 11/11 in VECTOR_ELT
Backtrace:
▆
1. └─rENA::ena(...) at test-table_subsetting.R:11:3
2. └─rENA:::ena.set.creator(...)
3. └─rENA::ena.accumulate.data(...)
4. └─data$process()
5. └─private$loadFile()
6. └─rENA:::accumulate.data(self)
7. ├─...[]
8. └─data.table:::`[.data.table`(...)
── Error ('test-verify_toy_data_2.R:82:1'): (code run outside of `test_that()`) ──
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 9/9 in VECTOR_ELT
Backtrace:
▆
1. └─rENA:::ena.accumulate.data.file(...) at test-verify_toy_data_2.R:82:1
2. └─data$process()
3. └─private$loadFile()
4. └─rENA:::accumulate.data(self)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-zero-networks.R:3:1'): (code run outside of `test_that()`) ─────
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 15/15 in VECTOR_ELT
Backtrace:
▆
1. └─rENA::ena.accumulate.data(...) at test-zero-networks.R:3:1
2. └─data$process()
3. └─private$loadFile()
4. └─rENA:::accumulate.data(self)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test.connection.matrix.R:13:1'): (code run outside of `test_that()`) ──
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 11/11 in VECTOR_ELT
Backtrace:
▆
1. └─rENA::ena(...) at test.connection.matrix.R:13:1
2. └─rENA:::ena.set.creator(...)
3. └─rENA::ena.accumulate.data(...)
4. └─data$process()
5. └─private$loadFile()
6. └─rENA:::accumulate.data(self)
7. ├─...[]
8. └─data.table:::`[.data.table`(...)
── Error ('test.ena.accumulate.data.file.R:70:3'): Accumulate weighted data. ───
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 9/9 in VECTOR_ELT
Backtrace:
▆
1. └─rENA:::ena.accumulate.data.file(...) at test.ena.accumulate.data.file.R:70:3
2. └─data$process()
3. └─private$loadFile()
4. └─rENA:::accumulate.data(self)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test.ena.accumulate.data.file.R:127:3'): Corrected adjacency.vectors equals manually corrected raw data (correction = log) ──
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 9/9 in VECTOR_ELT
Backtrace:
▆
1. └─rENA:::ena.accumulate.data.file(...) at test.ena.accumulate.data.file.R:127:3
2. └─data$process()
3. └─private$loadFile()
4. └─rENA:::accumulate.data(self)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test.ena.accumulate.data.file.R:161:3'): Simple forwarded metadata ──
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 8/8 in VECTOR_ELT
Backtrace:
▆
1. └─rENA:::ena.accumulate.data.file(...) at test.ena.accumulate.data.file.R:161:3
2. └─data$process()
3. └─private$loadFile()
4. └─rENA:::accumulate.data(self)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test.ena.accumulations.R:260:3'): Test accumulation with infinite windows ──
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 6/6 in VECTOR_ELT
Backtrace:
▆
1. └─rENA::ena.accumulate.data(...) at test.ena.accumulations.R:260:3
2. └─data$process()
3. └─private$loadFile()
4. └─rENA:::accumulate.data(self)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test.ena.accumulations.R:363:3'): Test forward windows ──────────────
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 6/6 in VECTOR_ELT
Backtrace:
▆
1. └─rENA::ena.accumulate.data(...) at test.ena.accumulations.R:363:3
2. └─data$process()
3. └─private$loadFile()
4. └─rENA:::accumulate.data(self)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test.ena.make.set.old.R:131:3'): Old sets are the same as the new ones ──
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 21/21 in VECTOR_ELT
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test.ena.make.set.old.R:131:3
2. │ └─base::withCallingHandlers(...)
3. └─rENA:::ena.accumulate.data.file(...)
4. └─data$process()
5. └─private$loadFile()
6. └─rENA:::accumulate.data(self)
7. ├─...[]
8. └─data.table:::`[.data.table`(...)
── Error ('test.ena.use.cases.R:7:1'): (code run outside of `test_that()`) ─────
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 14/14 in VECTOR_ELT
Backtrace:
▆
1. └─rENA::ena.accumulate.data(...) at test.ena.use.cases.R:7:1
2. └─data$process()
3. └─private$loadFile()
4. └─rENA:::accumulate.data(self)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test.util.classes.R:13:1'): (code run outside of `test_that()`) ─────
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 11/11 in VECTOR_ELT
Backtrace:
▆
1. └─rENA::ena(...) at test.util.classes.R:13:1
2. └─rENA:::ena.set.creator(...)
3. └─rENA::ena.accumulate.data(...)
4. └─data$process()
5. └─private$loadFile()
6. └─rENA:::accumulate.data(self)
7. ├─...[]
8. └─data.table:::`[.data.table`(...)
── Error ('test.util.matrices.R:11:1'): (code run outside of `test_that()`) ────
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 11/11 in VECTOR_ELT
Backtrace:
▆
1. └─rENA::ena(...) at test.util.matrices.R:11:1
2. └─rENA:::ena.set.creator(...)
3. └─rENA::ena.accumulate.data(...)
4. └─data$process()
5. └─private$loadFile()
6. └─rENA:::accumulate.data(self)
7. ├─...[]
8. └─data.table:::`[.data.table`(...)
── Error ('test.utils.R:11:1'): (code run outside of `test_that()`) ────────────
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 11/11 in VECTOR_ELT
Backtrace:
▆
1. └─rENA::ena(...) at test.utils.R:11:1
2. └─rENA:::ena.set.creator(...)
3. └─rENA::ena.accumulate.data(...)
4. └─data$process()
5. └─private$loadFile()
6. └─rENA:::accumulate.data(self)
7. ├─...[]
8. └─data.table:::`[.data.table`(...)
── Error ('test.weighted.single.window.R:21:3'): Verify binary/weighted accumulations with window > 1 are not equal ──
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 6/6 in VECTOR_ELT
Backtrace:
▆
1. └─rENA::ena.accumulate.data(...) at test.weighted.single.window.R:21:3
2. └─data$process()
3. └─private$loadFile()
4. └─rENA:::accumulate.data(self)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
[ FAIL 20 | WARN 0 | SKIP 3 | PASS 113 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.3.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [24s/40s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(rENA)
Registered S3 method overwritten by 'rENA':
method from
as.matrix.ena.matrix tma
For the latest features and updates, install from https://cran.qe-libs.org
Attaching package: 'rENA'
The following object is masked from 'package:stats':
optimize
The following object is masked from 'package:methods':
show
The following object is masked from 'package:base':
units
>
> test_check("rENA")
Saving _problems/test-ena_group-19.R
Saving _problems/test-ena_wrapper-23.R
Saving _problems/test-piping-17.R
Saving _problems/test-set_creator-30.R
Saving _problems/test-set_creator-121.R
Saving _problems/test-table_subsetting-17.R
Saving _problems/test-verify_toy_data_2-87.R
Saving _problems/test-zero-networks-10.R
Saving _problems/test.connection.matrix-19.R
Saving _problems/test.ena.accumulate.data.file-75.R
Saving _problems/test.ena.accumulate.data.file-133.R
Saving _problems/test.ena.accumulate.data.file-161.R
Saving _problems/test.ena.accumulations-262.R
Saving _problems/test.ena.accumulations-365.R
Saving _problems/test.ena.make.set.old-137.R
[1] "Using custom rotation.set."
[1] "Using custom rotation.set."
Saving _problems/test.ena.use.cases-13.R
Saving _problems/test.util.classes-19.R
Saving _problems/test.util.matrices-17.R
Saving _problems/test.utils-17.R
Saving _problems/test.weighted.single.window-24.R
[ FAIL 20 | WARN 0 | SKIP 3 | PASS 113 ]
══ Skipped tests (3) ═══════════════════════════════════════════════════════════
• empty test (3): , 'test.weighted.single.window.R:34:1',
'test.weighted.single.window.R:51:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-ena_group.R:13:1'): (code run outside of `test_that()`) ────────
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 11/11 in VECTOR_ELT
Backtrace:
▆
1. └─rENA::ena(...) at test-ena_group.R:13:1
2. └─rENA:::ena.set.creator(...)
3. └─rENA::ena.accumulate.data(...)
4. └─data$process()
5. └─private$loadFile()
6. └─rENA:::accumulate.data(self)
7. ├─...[]
8. └─data.table:::`[.data.table`(...)
── Error ('test-ena_wrapper.R:17:3'): Verify group with single unit ────────────
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 11/11 in VECTOR_ELT
Backtrace:
▆
1. └─rENA::ena(...) at test-ena_wrapper.R:17:3
2. └─rENA:::ena.set.creator(...)
3. └─rENA::ena.accumulate.data(...)
4. └─data$process()
5. └─private$loadFile()
6. └─rENA:::accumulate.data(self)
7. ├─...[]
8. └─data.table:::`[.data.table`(...)
── Error ('test-piping.R:11:1'): (code run outside of `test_that()`) ───────────
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 11/11 in VECTOR_ELT
Backtrace:
▆
1. └─rENA::ena.accumulate.data(...) at test-piping.R:11:1
2. └─data$process()
3. └─private$loadFile()
4. └─rENA:::accumulate.data(self)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-set_creator.R:22:3'): verify warnings ──────────────────────────
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 12/12 in VECTOR_ELT
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test-set_creator.R:22:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─rENA:::ena.set.creator(...)
7. └─rENA::ena.accumulate.data(...)
8. └─data$process()
9. └─private$loadFile()
10. └─rENA:::accumulate.data(self)
11. ├─...[]
12. └─data.table:::`[.data.table`(...)
── Error ('test-set_creator.R:112:3'): verify messages ─────────────────────────
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 12/12 in VECTOR_ELT
Backtrace:
▆
1. ├─testthat::expect_message(...) at test-set_creator.R:112:3
2. │ └─testthat:::quasi_capture(enquo(object), label, capture_messages)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─rENA:::ena.set.creator(...)
7. └─rENA::ena.accumulate.data(...)
8. └─data$process()
9. └─private$loadFile()
10. └─rENA:::accumulate.data(self)
11. ├─...[]
12. └─data.table:::`[.data.table`(...)
── Error ('test-table_subsetting.R:11:3'): Remove rows from meta data ──────────
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 11/11 in VECTOR_ELT
Backtrace:
▆
1. └─rENA::ena(...) at test-table_subsetting.R:11:3
2. └─rENA:::ena.set.creator(...)
3. └─rENA::ena.accumulate.data(...)
4. └─data$process()
5. └─private$loadFile()
6. └─rENA:::accumulate.data(self)
7. ├─...[]
8. └─data.table:::`[.data.table`(...)
── Error ('test-verify_toy_data_2.R:82:1'): (code run outside of `test_that()`) ──
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 9/9 in VECTOR_ELT
Backtrace:
▆
1. └─rENA:::ena.accumulate.data.file(...) at test-verify_toy_data_2.R:82:1
2. └─data$process()
3. └─private$loadFile()
4. └─rENA:::accumulate.data(self)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test-zero-networks.R:3:1'): (code run outside of `test_that()`) ─────
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 15/15 in VECTOR_ELT
Backtrace:
▆
1. └─rENA::ena.accumulate.data(...) at test-zero-networks.R:3:1
2. └─data$process()
3. └─private$loadFile()
4. └─rENA:::accumulate.data(self)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test.connection.matrix.R:13:1'): (code run outside of `test_that()`) ──
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 11/11 in VECTOR_ELT
Backtrace:
▆
1. └─rENA::ena(...) at test.connection.matrix.R:13:1
2. └─rENA:::ena.set.creator(...)
3. └─rENA::ena.accumulate.data(...)
4. └─data$process()
5. └─private$loadFile()
6. └─rENA:::accumulate.data(self)
7. ├─...[]
8. └─data.table:::`[.data.table`(...)
── Error ('test.ena.accumulate.data.file.R:70:3'): Accumulate weighted data. ───
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 9/9 in VECTOR_ELT
Backtrace:
▆
1. └─rENA:::ena.accumulate.data.file(...) at test.ena.accumulate.data.file.R:70:3
2. └─data$process()
3. └─private$loadFile()
4. └─rENA:::accumulate.data(self)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test.ena.accumulate.data.file.R:127:3'): Corrected adjacency.vectors equals manually corrected raw data (correction = log) ──
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 9/9 in VECTOR_ELT
Backtrace:
▆
1. └─rENA:::ena.accumulate.data.file(...) at test.ena.accumulate.data.file.R:127:3
2. └─data$process()
3. └─private$loadFile()
4. └─rENA:::accumulate.data(self)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test.ena.accumulate.data.file.R:161:3'): Simple forwarded metadata ──
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 8/8 in VECTOR_ELT
Backtrace:
▆
1. └─rENA:::ena.accumulate.data.file(...) at test.ena.accumulate.data.file.R:161:3
2. └─data$process()
3. └─private$loadFile()
4. └─rENA:::accumulate.data(self)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test.ena.accumulations.R:260:3'): Test accumulation with infinite windows ──
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 6/6 in VECTOR_ELT
Backtrace:
▆
1. └─rENA::ena.accumulate.data(...) at test.ena.accumulations.R:260:3
2. └─data$process()
3. └─private$loadFile()
4. └─rENA:::accumulate.data(self)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test.ena.accumulations.R:363:3'): Test forward windows ──────────────
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 6/6 in VECTOR_ELT
Backtrace:
▆
1. └─rENA::ena.accumulate.data(...) at test.ena.accumulations.R:363:3
2. └─data$process()
3. └─private$loadFile()
4. └─rENA:::accumulate.data(self)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test.ena.make.set.old.R:131:3'): Old sets are the same as the new ones ──
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 21/21 in VECTOR_ELT
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test.ena.make.set.old.R:131:3
2. │ └─base::withCallingHandlers(...)
3. └─rENA:::ena.accumulate.data.file(...)
4. └─data$process()
5. └─private$loadFile()
6. └─rENA:::accumulate.data(self)
7. ├─...[]
8. └─data.table:::`[.data.table`(...)
── Error ('test.ena.use.cases.R:7:1'): (code run outside of `test_that()`) ─────
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 14/14 in VECTOR_ELT
Backtrace:
▆
1. └─rENA::ena.accumulate.data(...) at test.ena.use.cases.R:7:1
2. └─data$process()
3. └─private$loadFile()
4. └─rENA:::accumulate.data(self)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
── Error ('test.util.classes.R:13:1'): (code run outside of `test_that()`) ─────
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 11/11 in VECTOR_ELT
Backtrace:
▆
1. └─rENA::ena(...) at test.util.classes.R:13:1
2. └─rENA:::ena.set.creator(...)
3. └─rENA::ena.accumulate.data(...)
4. └─data$process()
5. └─private$loadFile()
6. └─rENA:::accumulate.data(self)
7. ├─...[]
8. └─data.table:::`[.data.table`(...)
── Error ('test.util.matrices.R:11:1'): (code run outside of `test_that()`) ────
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 11/11 in VECTOR_ELT
Backtrace:
▆
1. └─rENA::ena(...) at test.util.matrices.R:11:1
2. └─rENA:::ena.set.creator(...)
3. └─rENA::ena.accumulate.data(...)
4. └─data$process()
5. └─private$loadFile()
6. └─rENA:::accumulate.data(self)
7. ├─...[]
8. └─data.table:::`[.data.table`(...)
── Error ('test.utils.R:11:1'): (code run outside of `test_that()`) ────────────
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 11/11 in VECTOR_ELT
Backtrace:
▆
1. └─rENA::ena(...) at test.utils.R:11:1
2. └─rENA:::ena.set.creator(...)
3. └─rENA::ena.accumulate.data(...)
4. └─data$process()
5. └─private$loadFile()
6. └─rENA:::accumulate.data(self)
7. ├─...[]
8. └─data.table:::`[.data.table`(...)
── Error ('test.weighted.single.window.R:21:3'): Verify binary/weighted accumulations with window > 1 are not equal ──
Error in ``[.data.table`(dfDT_codes, , `:=`((codedTriNames), ref_window_df(.SD[, .SD, .SDcols = just_codes], windowSize = window$back, windowForward = window$forward, binary = binary)), by = conversations.by, .SDcols = initial_cols, with = T)`: attempt access index 6/6 in VECTOR_ELT
Backtrace:
▆
1. └─rENA::ena.accumulate.data(...) at test.weighted.single.window.R:21:3
2. └─data$process()
3. └─private$loadFile()
4. └─rENA:::accumulate.data(self)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
[ FAIL 20 | WARN 0 | SKIP 3 | PASS 113 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc