Last updated on 2026-07-23 07:51:42 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.74 | 79.29 | 341.36 | 420.65 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.74 | 53.10 | 216.01 | 269.11 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.74 | 109.00 | 543.57 | 652.57 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.74 | 54.00 | 216.39 | 270.39 | OK | |
| r-devel-windows-x86_64 | 1.74 | 105.00 | 364.00 | 469.00 | OK | |
| r-patched-linux-x86_64 | 1.74 | 77.75 | 324.44 | 402.19 | OK | |
| r-release-linux-x86_64 | 1.74 | 74.33 | 325.48 | 399.81 | OK | |
| r-release-macos-arm64 | 1.74 | 16.00 | 65.00 | 81.00 | OK | |
| r-release-macos-x86_64 | 1.74 | 52.00 | 322.00 | 374.00 | OK | |
| r-release-windows-x86_64 | 1.74 | 119.00 | 392.00 | 511.00 | OK | |
| r-oldrel-macos-arm64 | 1.74 | OK | ||||
| r-oldrel-macos-x86_64 | 1.74 | 53.00 | 296.00 | 349.00 | OK | |
| r-oldrel-windows-x86_64 | 1.74 | 119.00 | 447.00 | 566.00 | OK |
Version: 1.74
Check: tests
Result: ERROR
Running ‘test_io.R’ [0s/0s]
Running ‘test_mapqtl_io.R’ [2s/3s]
Comparing ‘test_mapqtl_io.Rout’ to ‘test_mapqtl_io.Rout.save’ ... OK
Running ‘test_qtl.R’ [0s/0s]
Running ‘test_scanonevar.R’ [5s/6s]
Comparing ‘test_scanonevar.Rout’ to ‘test_scanonevar.Rout.save’ ... OK
Running ‘test_tidyIO.R’ [0s/1s]
Comparing ‘test_tidyIO.Rout’ to ‘test_tidyIO.Rout.save’ ... OK
Running ‘testaugmentation.R’ [1s/2s]
Running ‘testthat.R’ [18s/22s]
Running the tests in ‘tests/test_io.R’ failed.
Complete output:
> ######################################################################
> #
> # TestIO/input.R
> #
> # copyright (c) 2002, Karl W Broman
> # last modified Feb, 2002
> # first written Feb, 2002
> #
> # This program is free software; you can redistribute it and/or
> # modify it under the terms of the GNU General Public License,
> # version 3, as published by the Free Software Foundation.
> #
> # This program is distributed in the hope that it will be useful,
> # but without any warranty; without even the implied warranty of
> # merchantability or fitness for a particular purpose. See the GNU
> # General Public License, version 3, for more details.
> #
> # A copy of the GNU General Public License, version 3, is available
> # at http://www.r-project.org/Licenses/GPL-3
> #
> # This file contains code for testing the cross IO in R/qtl.
> #
> # Needed input files:
> #
> # gen.txt, map.txt, phe.txt [Karl's format]
> # listeria.raw, listeria.map [mapmaker format]
> # listeria.raw, listeria2.map [mapmaker format; no marker pos]
> # listeria.csv [csv format]
> # listeria2.csv [csv format; no marker pos]
> #
> ######################################################################
>
> library(qtl)
>
> ##############################
> # Reading
> ##############################
> # Read CSV format
> csv <- read.cross("csv", "", "listeria.csv")
--Read the following data:
120 individuals
133 markers
1 phenotypes
--Cross type: f2
Warning message:
In fixXgeno.f2(cross, alleles) :*** buffer overflow detected ***: terminated
Aborted
Running the tests in ‘tests/test_qtl.R’ failed.
Complete output:
> ######################################################################
> #
> # test_qtl.R
> #
> # copyright (c) 2009, Karl W Broman, Pjotr Prins
> # first written July 2009
> #
> # This program is free software; you can redistribute it and/or
> # modify it under the terms of the GNU General Public License,
> # version 3, as published by the Free Software Foundation.
> #
> # This program is distributed in the hope that it will be useful,
> # but without any warranty; without even the implied warranty of
> # merchantability or fitness for a particular purpose. See the GNU
> # General Public License, version 3, for more details.
> #
> # A copy of the GNU General Public License, version 3, is available
> # at http://www.r-project.org/Licenses/GPL-3
> #
> # Some basic regression/integration testing for some of the QTL mapping routines
> #
> # You can run it with:
> #
> # R --no-save --no-restore --no-readline --slave < ./tests/test_qtl.R
>
> ######################################################################
>
> library(qtl)
>
> version = mqm_version()
> cat("R/qtl=",version$RQTL)
R/qtl= 1.74> cat("R-MQM=",version$RMQM)
R-MQM= 0.90-pre1> cat("MQM=",version$MQM)
MQM= 0.90-pre1>
>
> data(listeria)
> if (nind(listeria)!=120) stop("Number of individuals incorrect")
>
> # ---- a quick test of standard R/qtl scanone
> mr = scanone(listeria, method='mr')
Warning message:
In checkcovar(cross, pheno.col, addcovar, intcovar, perm.strata, :*** buffer overflow detected ***: terminated
Aborted
Flavor: r-devel-linux-x86_64-debian-gcc