Last updated on 2024-05-28 12:56:58 CEST.
| Package | WARN | NOTE | OK |
|---|---|---|---|
| bedr | 12 | ||
| BoutrosLab.plotting.general | 1 | 11 | |
| CancerEvolutionVisualization | 12 | ||
| ISOpureR | 1 | 11 | |
| iSubGen | 1 | 12 | |
| OmicsQC | 13 | ||
| SeqKat | 3 | 9 | |
| VennDiagram | 12 |
Current CRAN status: OK: 12
Current CRAN status: WARN: 1, OK: 11
Version: 7.1.0
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘PlottingGuide.Rnw’ using knitr_notangle
Warning in remind_sweave(if (in.file) input, sweave_lines) :
It seems you are using the Sweave-specific syntax in line(s) 2303, 2363; you may need Sweave2knitr("PlottingGuide.Rnw") to convert it to knitr
Error: processing vignette 'PlottingGuide.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'PlottingGuide.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.355 \hlkwd{library}\hldef
{(BoutrosLab.plotting.general);}
?
! Emergency stop.
! Emergency stop.
l.355
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘PlottingGuide.Rnw’
SUMMARY: processing the following file failed:
‘PlottingGuide.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Current CRAN status: OK: 12
Current CRAN status: WARN: 1, NOTE: 11
Version: 1.1.3
Check: Rd files
Result: NOTE
checkRd: (-1) ISOpureS1.model_optimize.kappa.kappa_deriv_loglikelihood.Rd:9: Escaped LaTeX specials: \$
checkRd: (-1) ISOpureS1.model_optimize.kappa.kappa_deriv_loglikelihood.Rd:14: Escaped LaTeX specials: \$
checkRd: (-1) ISOpureS1.model_optimize.kappa.kappa_loglikelihood.Rd:11: Escaped LaTeX specials: \$
checkRd: (-1) ISOpureS2.model_optimize.kappa.kappa_deriv_loglikelihood.Rd:11: Escaped LaTeX specials: \$
checkRd: (-1) ISOpureS2.model_optimize.kappa.kappa_loglikelihood.Rd:11: Escaped LaTeX specials: \$
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.1.3
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘ISOpureRGuide.Rnw’ using knitr_notangle
Error: processing vignette 'ISOpureRGuide.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'ISOpureRGuide.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.300 \hlkwd{library}\hldef
{(}\hlsng{"affy"}\hldef{);}
?
! Emergency stop.
! Emergency stop.
l.300
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘ISOpureRGuide.Rnw’
SUMMARY: processing the following file failed:
‘ISOpureRGuide.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Current CRAN status: WARN: 1, OK: 12
Version: 1.0.1
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘iSubGenGuide.Rnw’ using knitr_notangle
Error: processing vignette 'iSubGenGuide.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'iSubGenGuide.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.128 \hlkwd{library}\hldef
{(iSubGen);}
?
! Emergency stop.
! Emergency stop.
l.128
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘iSubGenGuide.Rnw’
SUMMARY: processing the following file failed:
‘iSubGenGuide.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Current CRAN status: OK: 13
Current CRAN status: NOTE: 3, OK: 9
Version: 0.0.8
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: 'doMC'
Flavors: r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64
Current CRAN status: OK: 12