Last updated on 2026-04-25 06:51:46 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.5.5 | 8.60 | 94.73 | 103.33 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.5.5 | 4.87 | 67.39 | 72.26 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.5.5 | 14.00 | 150.89 | 164.89 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.5.5 | 13.00 | 152.91 | 165.91 | OK | |
| r-patched-linux-x86_64 | 0.5.5 | 8.27 | 88.67 | 96.94 | OK | |
| r-release-linux-x86_64 | 0.5.5 | 7.55 | 86.44 | 93.99 | OK | |
| r-release-macos-arm64 | 0.5.5 | 2.00 | 28.00 | 30.00 | OK | |
| r-release-macos-x86_64 | 0.5.5 | 6.00 | 85.00 | 91.00 | ERROR | |
| r-release-windows-x86_64 | 0.5.5 | 9.00 | 98.00 | 107.00 | OK | |
| r-oldrel-macos-arm64 | 0.5.5 | 2.00 | 29.00 | 31.00 | OK | |
| r-oldrel-macos-x86_64 | 0.5.5 | 5.00 | 96.00 | 101.00 | OK | |
| r-oldrel-windows-x86_64 | 0.5.5 | 12.00 | 97.00 | 109.00 | OK |
Version: 0.5.5
Check: examples
Result: ERROR
Running examples in ‘ogrdbstats-Ex.R’ failed
The error most likely occurred in:
> ### Name: make_novel_base_grobs
> ### Title: Create plots showing base usage at selected locations in
> ### sequences based on novel alleles
> ### Aliases: make_novel_base_grobs
>
> ### ** Examples
>
> base_grobs = make_novel_base_grobs(
+ example_rep$inferred_seqs,
+ example_rep$input_sequences,
+ 'V',
+ FALSE
+ )
Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared object '/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/data.table/libs/data_table.so':
dlopen(/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/data.table/libs/data_table.so, 0x0006): Symbol not found: _IS_GROWABLE
Referenced from: <A2E3C2EA-FFF1-35E6-9621-C23F120F8433> /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/data.table/libs/data_table.so
Expected in: <0A9590E7-21FF-3C2D-B0BD-160A5BF4B716> /Library/Frameworks/R.framework/Versions/4.6-x86_64/Resources/lib/libR.dylib
Calls: make_novel_base_grobs ... <Anonymous> -> loadNamespace -> library.dynam -> dyn.load
Execution halted
Flavor: r-release-macos-x86_64
Version: 0.5.5
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘Using_ogrdbstats.Rmd’ using rmarkdown
Quitting from Using_ogrdbstats.Rmd:277-296 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `dyn.load()`:
! unable to load shared object '/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/data.table/libs/data_table.so':
dlopen(/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/data.table/libs/data_table.so, 0x0006): Symbol not found: _IS_GROWABLE
Referenced from: <A2E3C2EA-FFF1-35E6-9621-C23F120F8433> /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/data.table/libs/data_table.so
Expected in: <0A9590E7-21FF-3C2D-B0BD-160A5BF4B716> /Library/Frameworks/R.framework/Versions/4.6-x86_64/Resources/lib/libR.dylib
---
Backtrace:
▆
1. ├─ogrdbstats::make_novel_base_grobs(...)
2. │ └─base::mapply(...)
3. │ └─ogrdbstats (local) `<fn>`(...)
4. └─base::loadNamespace(x)
5. └─base::library.dynam(lib, package, package.lib)
6. └─base::dyn.load(file, DLLpath = DLLpath, ...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'Using_ogrdbstats.Rmd' failed with diagnostics:
unable to load shared object '/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/data.table/libs/data_table.so':
dlopen(/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/data.table/libs/data_table.so, 0x0006): Symbol not found: _IS_GROWABLE
Referenced from: <A2E3C2EA-FFF1-35E6-9621-C23F120F8433> /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.6/data.table/libs/data_table.so
Expected in: <0A9590E7-21FF-3C2D-B0BD-160A5BF4B716> /Library/Frameworks/R.framework/Versions/4.6-x86_64/Resources/lib/libR.dylib
--- failed re-building ‘Using_ogrdbstats.Rmd’
SUMMARY: processing the following file failed:
‘Using_ogrdbstats.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-macos-x86_64