Last updated on 2026-02-19 23:53:45 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.10.0 | 36.05 | 822.23 | 858.28 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.10.0 | 24.25 | 536.26 | 560.51 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.10.0 | 68.00 | 1377.40 | 1445.40 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.10.0 | 64.00 | 1335.35 | 1399.35 | ERROR | |
| r-devel-macos-arm64 | 0.10.0 | 8.00 | 122.00 | 130.00 | OK | |
| r-devel-windows-x86_64 | 0.10.0 | 36.00 | 576.00 | 612.00 | OK | |
| r-patched-linux-x86_64 | 0.10.0 | OK | ||||
| r-release-linux-x86_64 | 0.10.0 | 36.48 | 743.52 | 780.00 | OK | |
| r-release-macos-arm64 | 0.10.0 | OK | ||||
| r-release-macos-x86_64 | 0.10.0 | 26.00 | 542.00 | 568.00 | OK | |
| r-release-windows-x86_64 | 0.10.0 | 36.00 | 555.00 | 591.00 | OK | |
| r-oldrel-macos-arm64 | 0.10.0 | 8.00 | 121.00 | 129.00 | ERROR | |
| r-oldrel-macos-x86_64 | 0.10.0 | 28.00 | 1099.00 | 1127.00 | ERROR | |
| r-oldrel-windows-x86_64 | 0.10.0 | 50.00 | 681.00 | 731.00 | ERROR |
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [13m/17m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
Saving _problems/test_filter_ensemble-294.R
Saving _problems/test_filter_ensemble-307.R
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1]
> test_pipeop_blsmote.R: "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1]
> test_pipeop_blsmote.R: "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1]
> test_pipeop_blsmote.R: "Borderline-SMOTE done"
> test_pipeop_isomap.R: 2026-02-19 18:34:17.711944: Isomap START
> test_pipeop_isomap.R: 2026-02-19 18:34:17.713175: constructing knn graph
> test_pipeop_isomap.R: 2026-02-19 18:34:17.789553: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-19 18:34:17.824522: Classical Scaling
> test_pipeop_isomap.R: 2026-02-19 18:34:17.94203: Isomap START
> test_pipeop_isomap.R: 2026-02-19 18:34:17.945142: constructing knn graph
> test_pipeop_isomap.R: 2026-02-19 18:34:17.959555: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-19 18:34:17.989901: Classical Scaling
> test_pipeop_isomap.R: 2026-02-19 18:34:18.048649: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-19 18:34:18.052787: constructing knn graph
> test_pipeop_isomap.R: 2026-02-19 18:34:18.08795: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-19 18:34:18.18173: embedding
> test_pipeop_isomap.R: 2026-02-19 18:34:18.187835: DONE
> test_pipeop_isomap.R: 2026-02-19 18:34:18.239563: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-19 18:34:18.240285: constructing knn graph
> test_pipeop_isomap.R: 2026-02-19 18:34:18.264442: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-19 18:34:18.330743: embedding
> test_pipeop_isomap.R: 2026-02-19 18:34:18.335552: DONE
> test_pipeop_isomap.R: 2026-02-19 18:34:18.552519: Isomap START
> test_pipeop_isomap.R: 2026-02-19 18:34:18.553221: constructing knn graph
> test_pipeop_isomap.R: 2026-02-19 18:34:18.58373: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-19 18:34:18.907201: Classical Scaling
> test_pipeop_isomap.R: 2026-02-19 18:34:18.970483: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-19 18:34:18.97148: constructing knn graph
> test_pipeop_isomap.R: 2026-02-19 18:34:19.0689: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-19 18:34:19.990602: embedding
> test_pipeop_isomap.R: 2026-02-19 18:34:20.004404: DONE
> test_pipeop_isomap.R: 2026-02-19 18:34:20.785033: Isomap START
> test_pipeop_isomap.R: 2026-02-19 18:34:20.791902: constructing knn graph
> test_pipeop_isomap.R: 2026-02-19 18:34:20.824236: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-19 18:34:20.8923: Classical Scaling
> test_pipeop_isomap.R: 2026-02-19 18:34:21.072738: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-19 18:34:21.081837: constructing knn graph
> test_pipeop_isomap.R: 2026-02-19 18:34:21.137784: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-19 18:34:21.314548: embedding
> test_pipeop_isomap.R: 2026-02-19 18:34:21.326914: DONE
> test_pipeop_isomap.R: 2026-02-19 18:34:21.993729: Isomap START
> test_pipeop_isomap.R: 2026-02-19 18:34:21.999902: constructing knn graph
> test_pipeop_isomap.R: 2026-02-19 18:34:22.026003: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-19 18:34:22.085047: Classical Scaling
> test_pipeop_isomap.R: 2026-02-19 18:34:22.320501: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-19 18:34:22.321715: constructing knn graph
> test_pipeop_isomap.R: 2026-02-19 18:34:22.409018: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-19 18:34:22.616176: embedding
> test_pipeop_isomap.R: 2026-02-19 18:34:22.626208: DONE
> test_pipeop_isomap.R: 2026-02-19 18:34:23.132104: Isomap START
> test_pipeop_isomap.R: 2026-02-19 18:34:23.138906: constructing knn graph
> test_pipeop_isomap.R: 2026-02-19 18:34:23.176857: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-19 18:34:23.264568: Classical Scaling
> test_pipeop_isomap.R: 2026-02-19 18:34:23.54721: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-19 18:34:23.554694: constructing knn graph
> test_pipeop_isomap.R: 2026-02-19 18:34:23.629822: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-19 18:34:23.800127: embedding
> test_pipeop_isomap.R: 2026-02-19 18:34:23.802017: DONE
> test_pipeop_isomap.R: 2026-02-19 18:34:24.17711: Isomap START
> test_pipeop_isomap.R: 2026-02-19 18:34:24.177827: constructing knn graph
> test_pipeop_isomap.R: 2026-02-19 18:34:24.213441: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-19 18:34:24.300418: Classical Scaling
> test_pipeop_isomap.R: 2026-02-19 18:34:24.510828: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-19 18:34:24.522944: constructing knn graph
> test_pipeop_isomap.R: 2026-02-19 18:34:24.631022: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-19 18:34:24.769025: embedding
> test_pipeop_isomap.R: 2026-02-19 18:34:24.770954: DONE
> test_pipeop_isomap.R: 2026-02-19 18:34:25.102537: Isomap START
> test_pipeop_isomap.R: 2026-02-19 18:34:25.111374: constructing knn graph
> test_pipeop_isomap.R: 2026-02-19 18:34:25.135776: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-19 18:34:25.221349: Classical Scaling
> test_pipeop_isomap.R: 2026-02-19 18:34:25.44709: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-19 18:34:25.44822: constructing knn graph
> test_pipeop_isomap.R: 2026-02-19 18:34:25.520095: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-19 18:34:25.725942: embedding
> test_pipeop_isomap.R: 2026-02-19 18:34:25.736079: DONE
> test_pipeop_isomap.R: 2026-02-19 18:34:26.157053: Isomap START
> test_pipeop_isomap.R: 2026-02-19 18:34:26.163904: constructing knn graph
> test_pipeop_isomap.R: 2026-02-19 18:34:26.18571: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-19 18:34:26.249272: Classical Scaling
> test_pipeop_isomap.R: 2026-02-19 18:34:26.736936: Isomap START
> test_pipeop_isomap.R: 2026-02-19 18:34:26.737742: constructing knn graph
> test_pipeop_isomap.R: 2026-02-19 18:34:26.784967: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-19 18:34:26.873453: Classical Scaling
> test_pipeop_isomap.R: 2026-02-19 18:34:27.017218: Isomap START
> test_pipeop_isomap.R: 2026-02-19 18:34:27.025986: constructing knn graph
> test_pipeop_isomap.R: 2026-02-19 18:34:27.063874: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-19 18:34:27.168609: Classical Scaling
> test_pipeop_nmf.R: [PipeOpNMFstate]
> test_pipeop_nmf.R: [PipeOpNMFstate]
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-depr
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: ecated").
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 2 | WARN 0 | SKIP 100 | PASS 13055 ]
══ Skipped tests (100) ═════════════════════════════════════════════════════════
• On CRAN (96): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_datefeatures.R:10:3',
'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3',
'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3',
'test_pipeop_encodelmer.R:80:3', 'test_pipeop_featureunion.R:9:3',
'test_pipeop_featureunion.R:134:3', 'test_pipeop_filter.R:7:3',
'test_pipeop_fixfactors.R:9:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_ensemble.R:6:3',
'test_pipeop_impute.R:4:3', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_isomap.R:10:3', 'test_pipeop_kernelpca.R:9:3',
'test_pipeop_learner.R:17:3', 'test_pipeop_info.R:6:3',
'test_pipeop_learnerpicvplus.R:163:3', 'test_pipeop_missind.R:6:3',
'test_pipeop_modelmatrix.R:7:3', 'test_pipeop_multiplicityexply.R:9:3',
'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_mutate.R:9:3',
'test_pipeop_nearmiss.R:7:3', 'test_pipeop_learnercv.R:31:3',
'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_spatialsign.R:6:3', 'test_pipeop_subsample.R:6:3',
'test_pipeop_targetinvert.R:4:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafoscalerange.R:5:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_filter_ensemble.R:294:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all(is.nan(permutation_filter$scores[task$feature_names]))` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_filter_ensemble.R:307:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all.equal(object, expected, check.environment = FALSE, ...)` to be TRUE.
Differences:
`actual` is a character vector ('Mean relative difference: 0.3845363')
`expected` is a logical vector (TRUE)
Backtrace:
▆
1. └─global expect_equal(combined_scores, variance_scores * weights[["variance"]]) at test_filter_ensemble.R:307:3
2. └─testthat::expect_true(...)
[ FAIL 2 | WARN 0 | SKIP 100 | PASS 13055 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.10.0
Check: examples
Result: ERROR
Running examples in ‘mlr3pipelines-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlr_pipeops_nmf
> ### Title: Non-negative Matrix Factorization
> ### Aliases: mlr_pipeops_nmf PipeOpNMF
>
> ### ** Examples
>
> ## Don't show:
> if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ # NMF attaches these packages to search path on load, #929
+ lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE)
+ ## End(Don't show)
+ library("mlr3")
+
+ task = tsk("iris")
+ pop = po("nmf")
+
+ task$data()
+ pop$train(list(task))[[1]]$data()
+
+ pop$state
+ ## Don't show:
+ # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112
+ # Necessary as detaching packages does not remove registered S3 methods
+ suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE))
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"),
+ detach, character.only = TRUE)
Error in FUN(X[[i]], ...) : invalid 'name' argument
Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [108s/53s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
Saving _problems/test_filter_ensemble-294.R
Saving _problems/test_filter_ensemble-307.R
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-02-20 10:22:43.779415: Isomap START
> test_pipeop_isomap.R: 2026-02-20 10:22:43.780077: constructing knn graph
> test_pipeop_isomap.R: 2026-02-20 10:22:43.783192: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-20 10:22:43.789322: Classical Scaling
> test_pipeop_isomap.R: 2026-02-20 10:22:43.810758: Isomap START
> test_pipeop_isomap.R: 2026-02-20 10:22:43.81089: constructing knn graph
> test_pipeop_isomap.R: 2026-02-20 10:22:43.812887: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-20 10:22:43.818463: Classical Scaling
> test_pipeop_isomap.R: 2026-02-20 10:22:43.824638: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-20 10:22:43.824782: constructing knn graph
> test_pipeop_isomap.R: 2026-02-20 10:22:43.828866: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-20 10:22:43.843398: embedding
> test_pipeop_isomap.R: 2026-02-20 10:22:43.843773: DONE
> test_pipeop_isomap.R: 2026-02-20 10:22:43.850429: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-20 10:22:43.850606: constructing knn graph
> test_pipeop_isomap.R: 2026-02-20 10:22:43.85559: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-20 10:22:43.870524: embedding
> test_pipeop_isomap.R: 2026-02-20 10:22:43.870963: DONE
> test_pipeop_isomap.R: 2026-02-20 10:22:43.892581: Isomap START
> test_pipeop_isomap.R: 2026-02-20 10:22:43.892718: constructing knn graph
> test_pipeop_isomap.R: 2026-02-20 10:22:43.897034: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-20 10:22:43.929929: Classical Scaling
> test_pipeop_isomap.R: 2026-02-20 10:22:43.944046: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-20 10:22:43.944249: constructing knn graph
> test_pipeop_isomap.R: 2026-02-20 10:22:43.952785: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-20 10:22:44.032715: embedding
> test_pipeop_isomap.R: 2026-02-20 10:22:44.033907: DONE
> test_pipeop_isomap.R: 2026-02-20 10:22:44.068088: Isomap START
> test_pipeop_isomap.R: 2026-02-20 10:22:44.068217: constructing knn graph
> test_pipeop_isomap.R: 2026-02-20 10:22:44.070487: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-20 10:22:44.076587: Classical Scaling
> test_pipeop_isomap.R: 2026-02-20 10:22:44.0841: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-20 10:22:44.084283: constructing knn graph
> test_pipeop_isomap.R: 2026-02-20 10:22:44.092993: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-20 10:22:44.1082: embedding
> test_pipeop_isomap.R: 2026-02-20 10:22:44.108614: DONE
> test_pipeop_isomap.R: 2026-02-20 10:22:44.142592: Isomap START
> test_pipeop_isomap.R: 2026-02-20 10:22:44.142721: constructing knn graph
> test_pipeop_isomap.R: 2026-02-20 10:22:44.145115: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-20 10:22:44.151362: Classical Scaling
> test_pipeop_isomap.R: 2026-02-20 10:22:44.162944: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-20 10:22:44.163142: constructing knn graph
> test_pipeop_isomap.R: 2026-02-20 10:22:44.16793: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-20 10:22:44.182939: embedding
> test_pipeop_isomap.R: 2026-02-20 10:22:44.183379: DONE
> test_pipeop_isomap.R: 2026-02-20 10:22:44.20142: Isomap START
> test_pipeop_isomap.R: 2026-02-20 10:22:44.201539: constructing knn graph
> test_pipeop_isomap.R: 2026-02-20 10:22:44.207579: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-20 10:22:44.21307: Classical Scaling
> test_pipeop_isomap.R: 2026-02-20 10:22:44.224105: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-20 10:22:44.224279: constructing knn graph
> test_pipeop_isomap.R: 2026-02-20 10:22:44.228724: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-20 10:22:44.243263: embedding
> test_pipeop_isomap.R: 2026-02-20 10:22:44.243588: DONE
> test_pipeop_isomap.R: 2026-02-20 10:22:44.262672: Isomap START
> test_pipeop_isomap.R: 2026-02-20 10:22:44.262817: constructing knn graph
> test_pipeop_isomap.R: 2026-02-20 10:22:44.265144: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-20 10:22:44.271334: Classical Scaling
> test_pipeop_isomap.R: 2026-02-20 10:22:44.283426: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-20 10:22:44.283614: constructing knn graph
> test_pipeop_isomap.R: 2026-02-20 10:22:44.28824: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-20 10:22:44.303511: embedding
> test_pipeop_isomap.R: 2026-02-20 10:22:44.303928: DONE
> test_pipeop_isomap.R: 2026-02-20 10:22:44.327716: Isomap START
> test_pipeop_isomap.R: 2026-02-20 10:22:44.327875: constructing knn graph
> test_pipeop_isomap.R: 2026-02-20 10:22:44.330157: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-20 10:22:44.336248: Classical Scaling
> test_pipeop_isomap.R: 2026-02-20 10:22:44.348172: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-20 10:22:44.348346: constructing knn graph
> test_pipeop_isomap.R: 2026-02-20 10:22:44.352729: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-20 10:22:44.367541: embedding
> test_pipeop_isomap.R: 2026-02-20 10:22:44.368054: DONE
> test_pipeop_isomap.R: 2026-02-20 10:22:44.388844: Isomap START
> test_pipeop_isomap.R: 2026-02-20 10:22:44.388996: constructing knn graph
> test_pipeop_isomap.R: 2026-02-20 10:22:44.391438: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-20 10:22:44.397476: Classical Scaling
> test_pipeop_isomap.R: 2026-02-20 10:22:44.417466: Isomap START
> test_pipeop_isomap.R: 2026-02-20 10:22:44.417602: constructing knn graph
> test_pipeop_isomap.R: 2026-02-20 10:22:44.424421: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-20 10:22:44.430848: Classical Scaling
> test_pipeop_isomap.R: 2026-02-20 10:22:44.436879: Isomap START
> test_pipeop_isomap.R: 2026-02-20 10:22:44.437016: constructing knn graph
> test_pipeop_isomap.R: 2026-02-20 10:22:44.439212: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-20 10:22:44.445309: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 8 | WARN 0 | SKIP 99 | PASS 13004 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_boxcox.R:7:3',
'test_pipeop_classbalancing.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_select.R:9:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_filter_ensemble.R:294:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all(is.nan(permutation_filter$scores[task$feature_names]))` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_filter_ensemble.R:307:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all.equal(object, expected, check.environment = FALSE, ...)` to be TRUE.
Differences:
`actual` is a character vector ('Mean relative difference: 0.386064')
`expected` is a logical vector (TRUE)
Backtrace:
▆
1. └─global expect_equal(combined_scores, variance_scores * weights[["variance"]]) at test_filter_ensemble.R:307:3
2. └─testthat::expect_true(...)
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 8 | WARN 0 | SKIP 99 | PASS 13004 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [424s/554s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1]
> test_pipeop_blsmote.R: "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-02-16 12:42:03.448789: Isomap START
> test_pipeop_isomap.R: 2026-02-16 12:42:03.44991: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:03.51292: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:03.554752: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 12:42:03.685279: Isomap START
> test_pipeop_isomap.R: 2026-02-16 12:42:03.685995: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:03.700435: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:03.749001: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 12:42:03.792524: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-16 12:42:03.793396: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:03.86142: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:03.974069: embedding
> test_pipeop_isomap.R: 2026-02-16 12:42:03.977724: DONE
> test_pipeop_isomap.R: 2026-02-16 12:42:04.056452: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-16 12:42:04.057232: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:04.082463: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:04.182457: embedding
> test_pipeop_isomap.R: 2026-02-16 12:42:04.18392: DONE
> test_pipeop_isomap.R: 2026-02-16 12:42:04.383877: Isomap START
> test_pipeop_isomap.R: 2026-02-16 12:42:04.384168: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:04.410482: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:04.59234: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 12:42:04.63203: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-16 12:42:04.632532: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:04.694128: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:05.319163: embedding
> test_pipeop_isomap.R: 2026-02-16 12:42:05.324606: DONE
> test_pipeop_isomap.R: 2026-02-16 12:42:05.652853: Isomap START
> test_pipeop_isomap.R: 2026-02-16 12:42:05.653286: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:05.663621: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:05.706464: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 12:42:05.735485: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-16 12:42:05.736029: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:05.768998: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:05.845539: embedding
> test_pipeop_isomap.R: 2026-02-16 12:42:05.847664: DONE
> test_pipeop_isomap.R: 2026-02-16 12:42:06.156447: Isomap START
> test_pipeop_isomap.R: 2026-02-16 12:42:06.157106: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:06.168529: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:06.203423: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 12:42:06.28129: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-16 12:42:06.282232: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:06.317968: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:06.413315: embedding
> test_pipeop_isomap.R: 2026-02-16 12:42:06.420353: DONE
> test_pipeop_isomap.R: 2026-02-16 12:42:06.640564: Isomap START
> test_pipeop_isomap.R: 2026-02-16 12:42:06.640883: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:06.68676: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:06.73773: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 12:42:06.867146: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-16 12:42:06.868756: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:06.933461: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:07.017234: embedding
> test_pipeop_isomap.R: 2026-02-16 12:42:07.020134: DONE
> test_pipeop_isomap.R: 2026-02-16 12:42:07.169741: Isomap START
> test_pipeop_isomap.R: 2026-02-16 12:42:07.170125: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:07.200641: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:07.233351: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 12:42:07.388062: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-16 12:42:07.388522: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:07.405289: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:07.499942: embedding
> test_pipeop_isomap.R: 2026-02-16 12:42:07.501318: DONE
> test_pipeop_isomap.R: 2026-02-16 12:42:07.637899: Isomap START
> test_pipeop_isomap.R: 2026-02-16 12:42:07.639234: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:07.651689: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:07.698978: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 12:42:07.940215: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-16 12:42:07.940981: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:08.083141: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:08.161899: embedding
> test_pipeop_isomap.R: 2026-02-16 12:42:08.16393: DONE
> test_pipeop_isomap.R: 2026-02-16 12:42:08.402617: Isomap START
> test_pipeop_isomap.R: 2026-02-16 12:42:08.403039: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:08.460106: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:08.502159: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 12:42:08.682978: Isomap START
> test_pipeop_isomap.R: 2026-02-16 12:42:08.683359: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:08.69142: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:08.737656: Classical Scaling
> test_pipeop_isomap.R: 2026-02-16 12:42:08.763833: Isomap START
> test_pipeop_isomap.R: 2026-02-16 12:42:08.764318: constructing knn graph
> test_pipeop_isomap.R: 2026-02-16 12:42:08.7725: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-16 12:42:08.84466: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_randomprojection.R:6:3',
'test_pipeop_randomresponse.R:5:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_removeconstants.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running 'testthat.R' [298s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R:
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-02-18 19:48:35.240181: Isomap START
> test_pipeop_isomap.R: 2026-02-18 19:48:35.241081: constructing knn graph
> test_pipeop_isomap.R: 2026-02-18 19:48:35.252071: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-18 19:48:35.272309: Classical Scaling
> test_pipeop_isomap.R: 2026-02-18 19:48:35.344226: Isomap START
> test_pipeop_isomap.R: 2026-02-18 19:48:35.34502: constructing knn graph
> test_pipeop_isomap.R: 2026-02-18 19:48:35.35737: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-18 19:48:35.380456: Classical Scaling
> test_pipeop_isomap.R: 2026-02-18 19:48:35.438623: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-18 19:48:35.439574: constructing knn graph
> test_pipeop_isomap.R: 2026-02-18 19:48:35.463905: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-18 19:48:35.510254: embedding
> test_pipeop_isomap.R: 2026-02-18 19:48:35.511745: DONE
> test_pipeop_isomap.R: 2026-02-18 19:48:35.557557: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-18 19:48:35.558271: constructing knn graph
> test_pipeop_isomap.R: 2026-02-18 19:48:35.581444: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-18 19:48:35.631845: embedding
> test_pipeop_isomap.R: 2026-02-18 19:48:35.63382: DONE
> test_pipeop_isomap.R: 2026-02-18 19:48:35.774221: Isomap START
> test_pipeop_isomap.R: 2026-02-18 19:48:35.775106: constructing knn graph
> test_pipeop_isomap.R: 2026-02-18 19:48:35.804474: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-18 19:48:35.906093: Classical Scaling
> test_pipeop_isomap.R: 2026-02-18 19:48:35.956504: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-18 19:48:35.957212: constructing knn graph
> test_pipeop_isomap.R: 2026-02-18 19:48:35.989595: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-18 19:48:36.221575: embedding
> test_pipeop_isomap.R: 2026-02-18 19:48:36.226915: DONE
> test_pipeop_isomap.R: 2026-02-18 19:48:36.4609: Isomap START
> test_pipeop_isomap.R: 2026-02-18 19:48:36.461625: constructing knn graph
> test_pipeop_isomap.R: 2026-02-18 19:48:36.474411: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-18 19:48:36.498033: Classical Scaling
> test_pipeop_isomap.R: 2026-02-18 19:48:36.586458: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-18 19:48:36.587374: constructing knn graph
> test_pipeop_isomap.R: 2026-02-18 19:48:36.610859: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-18 19:48:36.655152: embedding
> test_pipeop_isomap.R: 2026-02-18 19:48:36.65643: DONE
> test_pipeop_isomap.R: 2026-02-18 19:48:36.875106: Isomap START
> test_pipeop_isomap.R: 2026-02-18 19:48:36.875884: constructing knn graph
> test_pipeop_isomap.R: 2026-02-18 19:48:36.891246: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-18 19:48:36.914856: Classical Scaling
> test_pipeop_isomap.R: 2026-02-18 19:48:36.996672: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-18 19:48:36.997575: constructing knn graph
> test_pipeop_isomap.R: 2026-02-18 19:48:37.019111: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-18 19:48:37.068084: embedding
> test_pipeop_isomap.R: 2026-02-18 19:48:37.069585: DONE
> test_pipeop_isomap.R: 2026-02-18 19:48:37.192988: Isomap START
> test_pipeop_isomap.R: 2026-02-18 19:48:37.193639: constructing knn graph
> test_pipeop_isomap.R: 2026-02-18 19:48:37.205401: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-18 19:48:37.226556: Classical Scaling
> test_pipeop_isomap.R: 2026-02-18 19:48:37.30247: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-18 19:48:37.30343: constructing knn graph
> test_pipeop_isomap.R: 2026-02-18 19:48:37.325033: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-18 19:48:37.375532: embedding
> test_pipeop_isomap.R: 2026-02-18 19:48:37.377205: DONE
> test_pipeop_isomap.R: 2026-02-18 19:48:37.476628: Isomap START
> test_pipeop_isomap.R: 2026-02-18 19:48:37.477107: constructing knn graph
> test_pipeop_isomap.R: 2026-02-18 19:48:37.486486: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-18 19:48:37.506933: Classical Scaling
> test_pipeop_isomap.R: 2026-02-18 19:48:37.579372: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-18 19:48:37.580378: constructing knn graph
> test_pipeop_isomap.R: 2026-02-18 19:48:37.600567: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-18 19:48:37.637775: embedding
> test_pipeop_isomap.R: 2026-02-18 19:48:37.639306: DONE
> test_pipeop_isomap.R: 2026-02-18 19:48:37.795762: Isomap START
> test_pipeop_isomap.R: 2026-02-18 19:48:37.79657: constructing knn graph
> test_pipeop_isomap.R: 2026-02-18 19:48:37.809735: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-18 19:48:37.832788: Classical Scaling
> test_pipeop_isomap.R: 2026-02-18 19:48:37.913672: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-18 19:48:37.914621: constructing knn graph
> test_pipeop_isomap.R: 2026-02-18 19:48:37.936344: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-18 19:48:37.977801: embedding
> test_pipeop_isomap.R: 2026-02-18 19:48:37.979398: DONE
> test_pipeop_isomap.R: 2026-02-18 19:48:38.118089: Isomap START
> test_pipeop_isomap.R: 2026-02-18 19:48:38.11875: constructing knn graph
> test_pipeop_isomap.R: 2026-02-18 19:48:38.13087: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-18 19:48:38.153065: Classical Scaling
> test_pipeop_isomap.R: 2026-02-18 19:48:38.263778: Isomap START
> test_pipeop_isomap.R: 2026-02-18 19:48:38.264236: constructing knn graph
> test_pipeop_isomap.R: 2026-02-18 19:48:38.272857: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-18 19:48:38.287934: Classical Scaling
> test_pipeop_isomap.R: 2026-02-18 19:48:38.311676: Isomap START
> test_pipeop_isomap.R: 2026-02-18 19:48:38.312128: constructing knn graph
> test_pipeop_isomap.R: 2026-02-18 19:48:38.321141: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-18 19:48:38.342314: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_boxcox.R:7:3',
'test_pipeop_classbalancing.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_learnercv.R:31:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_nearmiss.R:7:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_renamecolumns.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64