Last updated on 2025-07-10 19:18:21 CEST.
| Package | ERROR | NOTE |
|---|---|---|
| PhenotypeSimulator | 1 | 12 |
| plinkQC | 13 |
Current CRAN status: ERROR: 1, NOTE: 12
Version: 0.3.4
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Hannah Meyer <hannah.v.meyer@gmail.com>’
Package CITATION file contains call(s) to old-style personList() or
as.personList(). Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry(). Please
use bibentry() instead.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.3.4
Check: C++ specification
Result: NOTE
Specified C++11: please drop specification unless essential
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.3.4
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'PhenotypeSimulator.Rmd' using rmarkdown
--- finished re-building 'PhenotypeSimulator.Rmd'
--- re-building 'Simulation-and-LinearModel.Rmd' using rmarkdown
--- finished re-building 'Simulation-and-LinearModel.Rmd'
--- re-building 'SimulationBasedOnExampleData.Rmd' using rmarkdown
--- finished re-building 'SimulationBasedOnExampleData.Rmd'
--- re-building 'sample-scripts-external-genotype-simulation.Rmd' using rmarkdown
Could not fetch http://www.zotero.org/styles/plos
HttpExceptionRequest Request {
host = "www.zotero.org"
port = 80
secure = False
requestHeaders = []
path = "/styles/plos"
queryString = ""
method = "GET"
proxy = Nothing
rawBody = False
redirectCount = 10
responseTimeout = ResponseTimeoutDefault
requestVersion = HTTP/1.1
proxySecureMode = ProxySecureWithConnect
}
(ConnectionFailure Network.Socket.connect: <socket: 724>: failed (Connection timed out (WSAETIMEDOUT)))
Error: processing vignette 'sample-scripts-external-genotype-simulation.Rmd' failed with diagnostics:
pandoc document conversion failed with error 61
--- failed re-building 'sample-scripts-external-genotype-simulation.Rmd'
SUMMARY: processing the following file failed:
'sample-scripts-external-genotype-simulation.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-windows-x86_64
Version: 0.3.4
Check: installed package size
Result: NOTE
installed size is 5.7Mb
sub-directories of 1Mb or more:
doc 1.5Mb
extdata 3.1Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: NOTE: 13
Version: 0.3.4
Check: Rd files
Result: NOTE
checkRd: (-1) check_hwe.Rd:103: Lost braces; missing escapes or markup?
103 | {'ALL', 'AFF', 'UNAFF', 'ALL(QT)', 'ALL(NP)'}), A1 (Allele 1; usually minor),
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64