Last updated on 2025-07-11 12:49:48 CEST.
| Package | WARN | NOTE | OK |
|---|---|---|---|
| gkwreg | 1 | 3 | 5 |
Current CRAN status: WARN: 1, NOTE: 3, OK: 5
Version: 1.0.10
Check: whether the package can be loaded with stated dependencies
Result: WARN
using C++ compiler: ‘clang version 20.1.7’
make[1]: Entering directory '/tmp/RtmpxjcCgN/working_dir/RtmpLawkbj/gkwbetareg_compile_20250710235415'
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/TMB/include" -I"/data/gannet/ripley/R/test-clang/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_gkwbetareg -DCPPAD_FRAMEWORK -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c /tmp/RtmpxjcCgN/working_dir/RtmpLawkbj/gkwbetareg_compile_20250710235415/gkwbetareg.cpp -o /tmp/RtmpxjcCgN/working_dir/RtmpLawkbj/gkwbetareg_compile_20250710235415/gkwbetareg.o
In file included from /tmp/RtmpxjcCgN/working_dir/RtmpLawkbj/gkwbetareg_compile_20250710235415/gkwbetareg.cpp:17:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from /tmp/RtmpxjcCgN/working_dir/RtmpLawkbj/gkwbetareg_compile_20250710235415/gkwbetareg.cpp:17:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
3 warnings generated.
clang++-20 -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang20/lib -L/usr/local/clang20/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang20/lib/clang/20/lib/x86_64-unknown-linux-gnu -o /tmp/RtmpxjcCgN/working_dir/RtmpLawkbj/gkwbetareg_compile_20250710235415/gkwbetareg.so /tmp/RtmpxjcCgN/working_dir/RtmpLawkbj/gkwbetareg_compile_20250710235415/gkwbetareg.o
make[1]: Leaving directory '/tmp/RtmpxjcCgN/working_dir/RtmpLawkbj/gkwbetareg_compile_20250710235415'
make[1]: Entering directory '/tmp/RtmpxjcCgN/working_dir/RtmpLawkbj/gkwbetareg_compile_20250710235415'
make[1]: Leaving directory '/tmp/RtmpxjcCgN/working_dir/RtmpLawkbj/gkwbetareg_compile_20250710235415'
using C++ compiler: ‘clang version 20.1.7’
make[1]: Entering directory '/tmp/RtmpxjcCgN/working_dir/RtmpLawkbj/bkwreg_compile_20250710235738'
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/TMB/include" -I"/data/gannet/ripley/R/test-clang/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_bkwreg -DCPPAD_FRAMEWORK -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c /tmp/RtmpxjcCgN/working_dir/RtmpLawkbj/bkwreg_compile_20250710235738/bkwreg.cpp -o /tmp/RtmpxjcCgN/working_dir/RtmpLawkbj/bkwreg_compile_20250710235738/bkwreg.o
In file included from /tmp/RtmpxjcCgN/working_dir/RtmpLawkbj/bkwreg_compile_20250710235738/bkwreg.cpp:13:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from /tmp/RtmpxjcCgN/working_dir/RtmpLawkbj/bkwreg_compile_20250710235738/bkwreg.cpp:13:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
3 warnings generated.
clang++-20 -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang20/lib -L/usr/local/clang20/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang20/lib/clang/20/lib/x86_64-unknown-linux-gnu -o /tmp/RtmpxjcCgN/working_dir/RtmpLawkbj/bkwreg_compile_20250710235738/bkwreg.so /tmp/RtmpxjcCgN/working_dir/RtmpLawkbj/bkwreg_compile_20250710235738/bkwreg.o
make[1]: Leaving directory '/tmp/RtmpxjcCgN/working_dir/RtmpLawkbj/bkwreg_compile_20250710235738'
make[1]: Entering directory '/tmp/RtmpxjcCgN/working_dir/RtmpLawkbj/bkwreg_compile_20250710235738'
make[1]: Leaving directory '/tmp/RtmpxjcCgN/working_dir/RtmpLawkbj/bkwreg_compile_20250710235738'
using C++ compiler: ‘clang version 20.1.7’
make[1]: Entering directory '/tmp/RtmpxjcCgN/working_dir/RtmpLawkbj/ekwreg_compile_20250711000355'
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/TMB/include" -I"/data/gannet/ripley/R/test-clang/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_ekwreg -DCPPAD_FRAMEWORK -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c /tmp/RtmpxjcCgN/working_dir/RtmpLawkbj/ekwreg_compile_20250711000355/ekwreg.cpp -o /tmp/RtmpxjcCgN/working_dir/RtmpLawkbj/ekwreg_compile_20250711000355/ekwreg.o
In file included from /tmp/RtmpxjcCgN/working_dir/RtmpLawkbj/ekwreg_compile_20250711000355/ekwreg.cpp:19:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from /tmp/RtmpxjcCgN/working_dir/RtmpLawkbj/ekwreg_compile_20250711000355/ekwreg.cpp:19:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
3 warnings generated.
clang++-20 -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang20/lib -L/usr/local/clang20/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang20/lib/clang/20/lib/x86_64-unknown-linux-gnu -o /tmp/RtmpxjcCgN/working_dir/RtmpLawkbj/ekwreg_compile_20250711000355/ekwreg.so /tmp/RtmpxjcCgN/working_dir/RtmpLawkbj/ekwreg_compile_20250711000355/ekwreg.o
make[1]: Leaving directory '/tmp/RtmpxjcCgN/working_dir/RtmpLawkbj/ekwreg_compile_20250711000355'
make[1]: Entering directory '/tmp/RtmpxjcCgN/working_dir/RtmpLawkbj/ekwreg_compile_20250711000355'
make[1]: Leaving directory '/tmp/RtmpxjcCgN/working_dir/RtmpLawkbj/ekwreg_compile_20250711000355'
using C++ compiler: ‘clang version 20.1.7’
make[1]: Entering directory '/tmp/RtmpxjcCgN/working_dir/RtmpLawkbj/gkwmletmb_compile_20250711001006'
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/TMB/include" -I"/data/gannet/ripley/R/test-clang/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_gkwmletmb -DCPPAD_FRAMEWORK -isystem /usr/local/clang20/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c /tmp/RtmpxjcCgN/working_dir/RtmpLawkbj/gkwmletmb_compile_20250711001006/gkwmletmb.cpp -o /tmp/RtmpxjcCgN/working_dir/RtmpLawkbj/gkwmletmb_compile_20250711001006/gkwmletmb.o
In file included from /tmp/RtmpxjcCgN/working_dir/RtmpLawkbj/gkwmletmb_compile_20250711001006/gkwmletmb.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from /tmp/RtmpxjcCgN/working_dir/RtmpLawkbj/gkwmletmb_compile_20250711001006/gkwmletmb.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
3 warnings generated.
clang++-20 -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang20/lib -L/usr/local/clang20/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang20/lib/clang/20/lib/x86_64-unknown-linux-gnu -o /tmp/RtmpxjcCgN/working_dir/RtmpLawkbj/gkwmletmb_compile_20250711001006/gkwmletmb.so /tmp/RtmpxjcCgN/working_dir/RtmpLawkbj/gkwmletmb_compile_20250711001006/gkwmletmb.o -fopenmp
make[1]: Leaving directory '/tmp/RtmpxjcCgN/working_dir/RtmpLawkbj/gkwmletmb_compile_20250711001006'
make[1]: Entering directory '/tmp/RtmpxjcCgN/working_dir/RtmpLawkbj/gkwmletmb_compile_20250711001006'
make[1]: Leaving directory '/tmp/RtmpxjcCgN/working_dir/RtmpLawkbj/gkwmletmb_compile_20250711001006'
using C++ compiler: ‘clang version 20.1.7’
make[1]: Entering directory '/tmp/RtmpxjcCgN/working_dir/RtmpLawkbj/gkwreg_compile_20250711001718'
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/TMB/include" -I"/data/gannet/ripley/R/test-clang/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_gkwreg -DCPPAD_FRAMEWORK -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c /tmp/RtmpxjcCgN/working_dir/RtmpLawkbj/gkwreg_compile_20250711001718/gkwreg.cpp -o /tmp/RtmpxjcCgN/working_dir/RtmpLawkbj/gkwreg_compile_20250711001718/gkwreg.o
In file included from /tmp/RtmpxjcCgN/working_dir/RtmpLawkbj/gkwreg_compile_20250711001718/gkwreg.cpp:12:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from /tmp/RtmpxjcCgN/working_dir/RtmpLawkbj/gkwreg_compile_20250711001718/gkwreg.cpp:12:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
3 warnings generated.
make[1]: *** [/data/gannet/ripley/R/R-clang/share/make/shlib.mk:10: /tmp/RtmpxjcCgN/working_dir/RtmpLawkbj/gkwreg_compile_20250711001718/gkwreg.so] Interrupt
using C++ compiler: ‘clang version 20.1.7’
make[1]: Entering directory '/tmp/RtmpxjcCgN/working_dir/RtmpLawkbj/kkwreg_compile_20250711002405'
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/TMB/include" -I"/data/gannet/ripley/R/test-clang/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_kkwreg -DCPPAD_FRAMEWORK -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c /tmp/RtmpxjcCgN/working_dir/RtmpLawkbj/kkwreg_compile_20250711002405/kkwreg.cpp -o /tmp/RtmpxjcCgN/working_dir/RtmpLawkbj/kkwreg_compile_20250711002405/kkwreg.o
In file included from /tmp/RtmpxjcCgN/working_dir/RtmpLawkbj/kkwreg_compile_20250711002405/kkwreg.cpp:16:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from /tmp/RtmpxjcCgN/working_dir/RtmpLawkbj/kkwreg_compile_20250711002405/kkwreg.cpp:16:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
make[1]: *** [/data/gannet/ripley/R/R-clang/etc/Makeconf:209: /tmp/RtmpxjcCgN/working_dir/RtmpLawkbj/kkwreg_compile_20250711002405/kkwreg.o] Terminated
It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package. All dependencies must be
declared in DESCRIPTION.
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.0.10
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘RcppEigen’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.0.7
Check: installed package size
Result: NOTE
installed size is 10.6Mb
sub-directories of 1Mb or more:
libs 9.2Mb
Flavor: r-oldrel-macos-arm64
Version: 1.0.10
Check: installed package size
Result: NOTE
installed size is 9.8Mb
sub-directories of 1Mb or more:
libs 8.5Mb
Flavor: r-oldrel-macos-x86_64