CRAN Package Check Results for Package epidm

Last updated on 2025-12-20 11:50:20 CET.

Flavor	Version	T_install	T_check	T_total	Status
r-devel-linux-x86_64-debian-clang	1.0.4	7.59	54.97	62.56	ERROR
r-devel-linux-x86_64-debian-gcc	1.0.4	5.17	38.35	43.52	ERROR
r-devel-linux-x86_64-fedora-clang	1.0.4	12.00	86.01	98.01	ERROR
r-devel-linux-x86_64-fedora-gcc	1.0.4	12.00	81.55	93.55	ERROR
r-devel-windows-x86_64	1.0.4	8.00	78.00	86.00	OK
r-patched-linux-x86_64	1.0.4	6.78	49.29	56.07	OK
r-release-linux-x86_64	1.0.4	5.24	48.32	53.56	OK
r-release-macos-arm64	1.0.4				OK
r-release-macos-x86_64	1.0.4	5.00	46.00	51.00	OK
r-release-windows-x86_64	1.0.4	8.00	68.00	76.00	OK
r-oldrel-macos-arm64	1.0.4				OK
r-oldrel-macos-x86_64	1.0.4	4.00	36.00	40.00	OK
r-oldrel-windows-x86_64	1.0.4	12.00	81.00	93.00	OK

Check Details

Version: 1.0.4
Check: examples
Result: ERROR Running examples in ‘epidm-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: cip_spells > ### Title: Continuous Inpatient (CIP) Spells > ### Aliases: cip_spells > > ### ** Examples > > > cip_test <- data.frame( + id = c('465','465','465','465','8418','8418','8418', + '8418','8418','8418','8418','8418','26443', + '26443','26443','33299','33299','33299','33299', + '33299','33299','33299','33299','33299','33299', + '52635','52635','52635','52635','52635','52635', + '52635','52635','52635','52635','52635','52635', + '52635','52635','52635','52635','52635','52635', + '52635','52635','52635','52635','52635','52635', + '52635','52635','52635','78915','78915','78915'), + provider = c('X1T','X1T','X1T','X1T','KHA','KHA','KHA', + 'KHA','KHA','KHA','KHA','KHA','BX2','BX2', + 'BX2','PXH','PXH','PXH','PXH','PXH','PXH', + 'PXH','PXH','PXH','PXH','9HA','9HA','9HA', + '9HA','9HA','9HA','9HA','9HA','9HA','9HA', + '9HA','9HA','9HA','9HA','9HA','9HA','YYT', + 'YYT','YYT','YYT','YYT','YYT','YYT','YYT', + 'YYT','YYT','YYT','ABX','ABX','ABX'), + spell_start = as.Date(c( + '2020-03-07','2020-03-07','2020-03-25','2020-04-03','2020-01-25', + '2020-01-26','2020-07-14','2020-08-02','2020-08-12','2020-08-19', + '2020-08-19','2020-11-19','2019-11-12','2020-04-17','2020-04-23', + '2020-07-03','2020-01-17','2020-02-07','2020-03-20','2020-04-27', + '2020-06-21','2020-07-02','2020-10-17','2020-11-27','2021-01-02', + '2019-12-31','2020-01-02','2020-01-14','2020-01-16','2020-02-07', + '2020-02-11','2020-02-14','2020-02-18','2020-02-21','2020-02-25', + '2020-02-28','2020-03-09','2020-03-11','2020-03-12','2020-03-13', + '2020-03-14','2020-02-04','2020-02-07','2020-02-11','2020-02-14', + '2020-02-18','2020-02-21','2020-02-25','2020-02-28','2020-03-09', + '2020-03-11','2020-03-12','2020-04-16','2020-04-24','2020-05-13')), + spell_end = as.Date(c( + '2020-03-07','2020-03-25','2020-04-02','2020-04-27','2020-01-25', + '2020-01-27','2020-07-17','2020-08-07','2020-08-14','2020-08-19', + '2020-08-22','2020-12-16','2020-04-17','2020-04-23','2020-05-20', + '2020-07-24','2020-01-28','2020-02-07','2020-03-23','2020-04-29', + '2020-06-21','2020-07-03','2020-11-27','2021-01-02','2021-01-10', + '2019-12-31','2020-01-11','2020-01-14','2020-02-04','2020-02-07', + '2020-02-11','2020-02-14','2020-02-18','2020-02-21','2020-02-25', + '2020-02-28','2020-03-09','2020-03-11','2020-03-12','2020-03-13', + '2020-03-30','2020-02-07','2020-02-11','2020-02-14','2020-02-18', + '2020-02-21','2020-02-25','2020-02-28','2020-03-09','2020-03-11', + '2020-03-12','2020-03-13','2020-04-24','2020-05-13','2020-06-11')), + adm_meth = c('21','81','21','81','21','21','11','21','21','21','21', + '21','21','81','21','81','21','21','21','21','21','21', + '21','13','13','12','22','12','2D','13','13','13','13', + '13','13','13','13','13','13','13','21','81','81','81', + '81','81','13','81','81','13','13','13','21','11','81'), + adm_src = c('19','51','19','51','19','51','19','51','19','19','19', + '51','19','51','19','51','19','19','19','19','19','19', + '19','51','19','19','19','19','19','19','19','19','19', + '19','19','19','51','51','51','51','19','51','51','51', + '51','51','51','51','51','51','51','51','19','51','51'), + dis_meth = c('1','1','1','1','1','1','1','1','1','1','1','4','1','1', + '4','1','1','1','1','1','1','1','8','1','4','1','1','1', + '1','1','1','1','1','1','1','1','1','1','1','1','1','1', + '1','1','1','1','1','1','1','1','1','1','1','1','2'), + dis_dest = c('51','51','51','54','51','19','19','19','19','51','19', + '79','51','51','79','65','19','19','19','19','19','29', + '98','51','79','19','19','19','51','19','19','19','51', + '51','51','19','19','51','51','19','51','51','51','51', + '51','51','51','51','51','51','51','51','29','54','19'), + patclass = c('1','1','1','1','1','1','1','1','1','1','1','1','1','1', + '1','1','1','1','1','1','1','1','1','1','1','2','1','2', + '1','2','2','2','2','2','2','2','2','2','2','2','1','1', + '1','1','1','1','1','1','1','1','1','1','1','1','1') + ) > > cip_spells(x=cip_test, + group_vars = c('id','provider'), + patient_classification = 'patclass', + spell_start_date = 'spell_start', + admission_method = 'adm_meth', + admission_source = 'adm_src', + spell_end_date = 'spell_end', + discharge_destination = 'dis_dest' + )[] Error in `[.data.table`(x, , `:=`(tmp.spellN, seq_len(.N)), by = group_vars) : attempt access index 9/9 in VECTOR_ELT Calls: cip_spells -> [ -> [.data.table Execution halted Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 1.0.4
Check: examples
Result: ERROR Running examples in ‘epidm-Ex.R’ failed The error most likely occurred in: > ### Name: cip_spells > ### Title: Continuous Inpatient (CIP) Spells > ### Aliases: cip_spells > > ### ** Examples > > > cip_test <- data.frame( + id = c('465','465','465','465','8418','8418','8418', + '8418','8418','8418','8418','8418','26443', + '26443','26443','33299','33299','33299','33299', + '33299','33299','33299','33299','33299','33299', + '52635','52635','52635','52635','52635','52635', + '52635','52635','52635','52635','52635','52635', + '52635','52635','52635','52635','52635','52635', + '52635','52635','52635','52635','52635','52635', + '52635','52635','52635','78915','78915','78915'), + provider = c('X1T','X1T','X1T','X1T','KHA','KHA','KHA', + 'KHA','KHA','KHA','KHA','KHA','BX2','BX2', + 'BX2','PXH','PXH','PXH','PXH','PXH','PXH', + 'PXH','PXH','PXH','PXH','9HA','9HA','9HA', + '9HA','9HA','9HA','9HA','9HA','9HA','9HA', + '9HA','9HA','9HA','9HA','9HA','9HA','YYT', + 'YYT','YYT','YYT','YYT','YYT','YYT','YYT', + 'YYT','YYT','YYT','ABX','ABX','ABX'), + spell_start = as.Date(c( + '2020-03-07','2020-03-07','2020-03-25','2020-04-03','2020-01-25', + '2020-01-26','2020-07-14','2020-08-02','2020-08-12','2020-08-19', + '2020-08-19','2020-11-19','2019-11-12','2020-04-17','2020-04-23', + '2020-07-03','2020-01-17','2020-02-07','2020-03-20','2020-04-27', + '2020-06-21','2020-07-02','2020-10-17','2020-11-27','2021-01-02', + '2019-12-31','2020-01-02','2020-01-14','2020-01-16','2020-02-07', + '2020-02-11','2020-02-14','2020-02-18','2020-02-21','2020-02-25', + '2020-02-28','2020-03-09','2020-03-11','2020-03-12','2020-03-13', + '2020-03-14','2020-02-04','2020-02-07','2020-02-11','2020-02-14', + '2020-02-18','2020-02-21','2020-02-25','2020-02-28','2020-03-09', + '2020-03-11','2020-03-12','2020-04-16','2020-04-24','2020-05-13')), + spell_end = as.Date(c( + '2020-03-07','2020-03-25','2020-04-02','2020-04-27','2020-01-25', + '2020-01-27','2020-07-17','2020-08-07','2020-08-14','2020-08-19', + '2020-08-22','2020-12-16','2020-04-17','2020-04-23','2020-05-20', + '2020-07-24','2020-01-28','2020-02-07','2020-03-23','2020-04-29', + '2020-06-21','2020-07-03','2020-11-27','2021-01-02','2021-01-10', + '2019-12-31','2020-01-11','2020-01-14','2020-02-04','2020-02-07', + '2020-02-11','2020-02-14','2020-02-18','2020-02-21','2020-02-25', + '2020-02-28','2020-03-09','2020-03-11','2020-03-12','2020-03-13', + '2020-03-30','2020-02-07','2020-02-11','2020-02-14','2020-02-18', + '2020-02-21','2020-02-25','2020-02-28','2020-03-09','2020-03-11', + '2020-03-12','2020-03-13','2020-04-24','2020-05-13','2020-06-11')), + adm_meth = c('21','81','21','81','21','21','11','21','21','21','21', + '21','21','81','21','81','21','21','21','21','21','21', + '21','13','13','12','22','12','2D','13','13','13','13', + '13','13','13','13','13','13','13','21','81','81','81', + '81','81','13','81','81','13','13','13','21','11','81'), + adm_src = c('19','51','19','51','19','51','19','51','19','19','19', + '51','19','51','19','51','19','19','19','19','19','19', + '19','51','19','19','19','19','19','19','19','19','19', + '19','19','19','51','51','51','51','19','51','51','51', + '51','51','51','51','51','51','51','51','19','51','51'), + dis_meth = c('1','1','1','1','1','1','1','1','1','1','1','4','1','1', + '4','1','1','1','1','1','1','1','8','1','4','1','1','1', + '1','1','1','1','1','1','1','1','1','1','1','1','1','1', + '1','1','1','1','1','1','1','1','1','1','1','1','2'), + dis_dest = c('51','51','51','54','51','19','19','19','19','51','19', + '79','51','51','79','65','19','19','19','19','19','29', + '98','51','79','19','19','19','51','19','19','19','51', + '51','51','19','19','51','51','19','51','51','51','51', + '51','51','51','51','51','51','51','51','29','54','19'), + patclass = c('1','1','1','1','1','1','1','1','1','1','1','1','1','1', + '1','1','1','1','1','1','1','1','1','1','1','2','1','2', + '1','2','2','2','2','2','2','2','2','2','2','2','1','1', + '1','1','1','1','1','1','1','1','1','1','1','1','1') + ) > > cip_spells(x=cip_test, + group_vars = c('id','provider'), + patient_classification = 'patclass', + spell_start_date = 'spell_start', + admission_method = 'adm_meth', + admission_source = 'adm_src', + spell_end_date = 'spell_end', + discharge_destination = 'dis_dest' + )[] Error in `[.data.table`(x, , `:=`(tmp.spellN, seq_len(.N)), by = group_vars) : attempt access index 9/9 in VECTOR_ELT Calls: cip_spells -> [ -> [.data.table Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc