Last updated on 2025-12-19 05:49:47 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.17.8 | 35.50 | 300.56 | 336.06 | WARN | |
| r-devel-linux-x86_64-debian-gcc | 1.17.8 | 30.11 | 205.60 | 235.71 | WARN | |
| r-devel-linux-x86_64-fedora-clang | 1.17.8 | 66.00 | 295.39 | 361.39 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 1.17.8 | 86.00 | 302.77 | 388.77 | ERROR | |
| r-devel-windows-x86_64 | 1.17.8 | 69.00 | 673.00 | 742.00 | WARN | |
| r-patched-linux-x86_64 | 1.17.8 | 41.16 | 240.00 | 281.16 | NOTE | |
| r-release-linux-x86_64 | 1.17.8 | 38.68 | 242.43 | 281.11 | NOTE | |
| r-release-macos-arm64 | 1.17.8 | NOTE | ||||
| r-release-macos-x86_64 | 1.17.8 | 30.00 | 256.00 | 286.00 | NOTE | |
| r-release-windows-x86_64 | 1.17.8 | 62.00 | 616.00 | 678.00 | NOTE | |
| r-oldrel-macos-arm64 | 1.17.8 | NOTE | ||||
| r-oldrel-macos-x86_64 | 1.17.8 | 30.00 | 257.00 | 287.00 | NOTE | |
| r-oldrel-windows-x86_64 | 1.17.8 | 70.00 | 778.00 | 848.00 | NOTE |
Version: 1.17.8
Check: compiled code
Result: WARN
File ‘data.table/libs/data_table.so’:
Found non-API calls to R: ‘OBJECT’, ‘SETLENGTH’, ‘SET_GROWABLE_BIT’,
‘SET_OBJECT’, ‘SET_TRUELENGTH’, ‘TRUELENGTH’
This entry point may be removed soon:
‘OBJECT’
Compiled code should not call non-API entry points in R.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.17.8
Check: tests
Result: NOTE
Running ‘S4.R’ [1s/1s]
Running ‘autoprint.R’ [1s/1s]
Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ...4,10d3
<
< Attaching package: 'data.table'
<
< The following object is masked from 'package:base':
<
< %notin%
<
Running ‘froll.R’ [31s/29s]
Running ‘knitr.R’ [1s/1s]
Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK
Running ‘main.R’ [120s/101s]
Running ‘nafill.R’ [1s/1s]
Running ‘other.R’ [0s/1s]
Running ‘programming.R’ [2s/2s]
Running ‘types.R’ [1s/1s]
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.17.8
Check: tests
Result: NOTE
Running ‘S4.R’ [0s/1s]
Running ‘autoprint.R’ [0s/0s]
Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ...4,10d3
<
< Attaching package: 'data.table'
<
< The following object is masked from 'package:base':
<
< %notin%
<
Running ‘froll.R’ [14s/16s]
Running ‘knitr.R’ [0s/1s]
Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK
Running ‘main.R’ [86s/80s]
Running ‘nafill.R’ [1s/1s]
Running ‘other.R’ [0s/0s]
Running ‘programming.R’ [1s/1s]
Running ‘types.R’ [0s/0s]
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.17.8
Check: compiled code
Result: WARN
File ‘data.table/libs/data_table.so’:
Found non-API calls to R: ‘ATTRIB’, ‘OBJECT’, ‘SETLENGTH’,
‘SET_ATTRIB’, ‘SET_GROWABLE_BIT’, ‘SET_OBJECT’, ‘SET_TRUELENGTH’,
‘TRUELENGTH’
This entry point may be removed soon:
‘OBJECT’
Compiled code should not call non-API entry points in R.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.17.8
Check: examples
Result: ERROR
Running examples in ‘data.table-Ex.R’ failed
The error most likely occurred in:
> ### Name: data.table-package
> ### Title: Enhanced data.frame
> ### Aliases: data.table-package data.table Ops.data.table is.na.data.table
> ### [.data.table . .( .() ..
> ### Keywords: data
>
> ### ** Examples
>
> ## Not run:
> ##D example(data.table) # to run these examples yourself
> ## End(Not run)
> DF = data.frame(x=rep(c("b","a","c"),each=3), y=c(1,3,6), v=1:9)
> DT = data.table(x=rep(c("b","a","c"),each=3), y=c(1,3,6), v=1:9)
> DF
x y v
1 b 1 1
2 b 3 2
3 b 6 3
4 a 1 4
5 a 3 5
6 a 6 6
7 c 1 7
8 c 3 8
9 c 6 9
> DT
x y v
<char> <num> <int>
1: b 1 1
2: b 3 2
3: b 6 3
4: a 1 4
5: a 3 5
6: a 6 6
7: c 1 7
8: c 3 8
9: c 6 9
> identical(dim(DT), dim(DF)) # TRUE
[1] TRUE
> identical(DF$a, DT$a) # TRUE
[1] TRUE
> is.list(DF) # TRUE
[1] TRUE
> is.list(DT) # TRUE
[1] TRUE
>
> is.data.frame(DT) # TRUE
[1] TRUE
>
> tables()
NAME NROW NCOL MB COLS KEY
1: DT 9 3 0 x,y,v [NULL]
Total: 0MB using type_size
>
> # basic row subset operations
> DT[2] # 2nd row
x y v
<char> <num> <int>
1: b 3 2
> DT[3:2] # 3rd and 2nd row
x y v
<char> <num> <int>
1: b 6 3
2: b 3 2
> DT[order(x)] # no need for order(DT$x)
x y v
<char> <num> <int>
1: a 1 4
2: a 3 5
3: a 6 6
4: b 1 1
5: b 3 2
6: b 6 3
7: c 1 7
8: c 3 8
9: c 6 9
> DT[order(x), ] # same as above. The ',' is optional
x y v
<char> <num> <int>
1: a 1 4
2: a 3 5
3: a 6 6
4: b 1 1
5: b 3 2
6: b 6 3
7: c 1 7
8: c 3 8
9: c 6 9
> DT[y>2] # all rows where DT$y > 2
x y v
<char> <num> <int>
1: b 3 2
2: b 6 3
3: a 3 5
4: a 6 6
5: c 3 8
6: c 6 9
> DT[y>2 & v>5] # compound logical expressions
x y v
<char> <num> <int>
1: a 6 6
2: c 3 8
3: c 6 9
> DT[!2:4] # all rows other than 2:4
x y v
<char> <num> <int>
1: b 1 1
2: a 3 5
3: a 6 6
4: c 1 7
5: c 3 8
6: c 6 9
> DT[-(2:4)] # same
x y v
<char> <num> <int>
1: b 1 1
2: a 3 5
3: a 6 6
4: c 1 7
5: c 3 8
6: c 6 9
>
> # select|compute columns data.table way
> DT[, v] # v column (as vector)
[1] 1 2 3 4 5 6 7 8 9
> DT[, list(v)] # v column (as data.table)
v
<int>
1: 1
2: 2
3: 3
4: 4
5: 5
6: 6
7: 7
8: 8
9: 9
> DT[, .(v)] # same as above, .() is a shorthand alias to list()
v
<int>
1: 1
2: 2
3: 3
4: 4
5: 5
6: 6
7: 7
8: 8
9: 9
> DT[, sum(v)] # sum of column v, returned as vector
[1] 45
> DT[, .(sum(v))] # same, but return data.table (column autonamed V1)
V1
<int>
1: 45
> DT[, .(sv=sum(v))] # same, but column named "sv"
sv
<int>
1: 45
> DT[, .(v, v*2)] # return two column data.table, v and v*2
v V2
<int> <num>
1: 1 2
2: 2 4
3: 3 6
4: 4 8
5: 5 10
6: 6 12
7: 7 14
8: 8 16
9: 9 18
>
> # subset rows and select|compute data.table way
> DT[2:3, sum(v)] # sum(v) over rows 2 and 3, return vector
[1] 5
> DT[2:3, .(sum(v))] # same, but return data.table with column V1
V1
<int>
1: 5
> DT[2:3, .(sv=sum(v))] # same, but return data.table with column sv
sv
<int>
1: 5
> DT[2:5, cat(v, "\n")] # just for j's side effect
2 3 4 5
NULL
>
> # select columns the data.frame way
> DT[, 2] # 2nd column, returns a data.table always
y
<num>
1: 1
2: 3
3: 6
4: 1
5: 3
6: 6
7: 1
8: 3
9: 6
> colNum = 2
> DT[, ..colNum] # same, .. prefix conveys one-level-up in calling scope
y
<num>
1: 1
2: 3
3: 6
4: 1
5: 3
6: 6
7: 1
8: 3
9: 6
> DT[["v"]] # same as DT[, v] but faster if called in a loop
[1] 1 2 3 4 5 6 7 8 9
>
> # grouping operations - j and by
> DT[, sum(v), by=x] # ad hoc by, order of groups preserved in result
x V1
<char> <int>
1: b 6
2: a 15
3: c 24
> DT[, sum(v), keyby=x] # same, but order the result on by cols
Key: <x>
x V1
<char> <int>
1: a 15
2: b 6
3: c 24
> DT[, sum(v), by=x, keyby=TRUE] # same, but using sorting flag
Key: <x>
x V1
<char> <int>
1: a 15
2: b 6
3: c 24
> DT[, sum(v), by=x][order(x)] # same but by chaining expressions together
x V1
<char> <int>
1: a 15
2: b 6
3: c 24
>
> # fast ad hoc row subsets (subsets as joins)
> DT["a", on="x"] # same as x == "a" but uses binary search (fast)
x y v
<char> <num> <int>
1: a 1 4
2: a 3 5
3: a 6 6
> DT["a", on=.(x)] # same, for convenience, no need to quote every column
x y v
<char> <num> <int>
1: a 1 4
2: a 3 5
3: a 6 6
> DT[.("a"), on="x"] # same
x y v
<char> <num> <int>
1: a 1 4
2: a 3 5
3: a 6 6
> DT[x=="a"] # same, single "==" internally optimised to use binary search (fast)
x y v
<char> <num> <int>
1: a 1 4
2: a 3 5
3: a 6 6
> DT[x!="b" | y!=3] # not yet optimized, currently vector scan subset
x y v
<char> <num> <int>
1: b 1 1
2: b 6 3
3: a 1 4
4: a 3 5
5: a 6 6
6: c 1 7
7: c 3 8
8: c 6 9
> DT[.("b", 3), on=c("x", "y")] # join on columns x,y of DT; uses binary search (fast)
x y v
<char> <num> <int>
1: b 3 2
> DT[.("b", 3), on=.(x, y)] # same, but using on=.()
x y v
<char> <num> <int>
1: b 3 2
> DT[.("b", 1:2), on=c("x", "y")] # no match returns NA
x y v
<char> <int> <int>
1: b 1 1
2: b 2 NA
> DT[.("b", 1:2), on=.(x, y), nomatch=NULL] # no match row is not returned
x y v
<char> <int> <int>
1: b 1 1
> DT[.("b", 1:2), on=c("x", "y"), roll=Inf] # locf, nomatch row gets rolled by previous row
x y v
<char> <int> <int>
1: b 1 1
2: b 2 1
> DT[.("b", 1:2), on=.(x, y), roll=-Inf] # nocb, nomatch row gets rolled by next row
x y v
<char> <int> <int>
1: b 1 1
2: b 2 2
> DT["b", sum(v*y), on="x"] # on rows where DT$x=="b", calculate sum(v*y)
[1] 25
>
> # all together now
> DT[x!="a", sum(v), by=x] # get sum(v) by "x" for each i != "a"
x V1
<char> <int>
1: b 6
2: c 24
> DT[!"a", sum(v), by=.EACHI, on="x"] # same, but using subsets-as-joins
x V1
<char> <int>
1: b 6
2: c 24
> DT[c("b","c"), sum(v), by=.EACHI, on="x"] # same
x V1
<char> <int>
1: b 6
2: c 24
> DT[c("b","c"), sum(v), by=.EACHI, on=.(x)] # same, using on=.()
x V1
<char> <int>
1: b 6
2: c 24
>
> # joins as subsets
> X = data.table(x=c("c","b"), v=8:7, foo=c(4,2))
> X
x v foo
<char> <int> <num>
1: c 8 4
2: b 7 2
>
> DT[X, on="x"] # right join
x y v i.v foo
<char> <num> <int> <int> <num>
1: c 1 7 8 4
2: c 3 8 8 4
3: c 6 9 8 4
4: b 1 1 7 2
5: b 3 2 7 2
6: b 6 3 7 2
> X[DT, on="x"] # left join
x v foo y i.v
<char> <int> <num> <num> <int>
1: b 7 2 1 1
2: b 7 2 3 2
3: b 7 2 6 3
4: a NA NA 1 4
5: a NA NA 3 5
6: a NA NA 6 6
7: c 8 4 1 7
8: c 8 4 3 8
9: c 8 4 6 9
> DT[X, on="x", nomatch=NULL] # inner join
x y v i.v foo
<char> <num> <int> <int> <num>
1: c 1 7 8 4
2: c 3 8 8 4
3: c 6 9 8 4
4: b 1 1 7 2
5: b 3 2 7 2
6: b 6 3 7 2
> DT[!X, on="x"] # not join
x y v
<char> <num> <int>
1: a 1 4
2: a 3 5
3: a 6 6
> DT[X, on=c(y="v")] # join using column "y" of DT with column "v" of X
x y v i.x foo
<char> <int> <int> <char> <num>
1: <NA> 8 NA c 4
2: <NA> 7 NA b 2
> DT[X, on="y==v"] # same as above (v1.9.8+)
x y v i.x foo
<char> <int> <int> <char> <num>
1: <NA> 8 NA c 4
2: <NA> 7 NA b 2
>
> DT[X, on=.(y<=foo)] # NEW non-equi join (v1.9.8+)
x y v i.x i.v
<char> <num> <int> <char> <int>
1: b 4 1 c 8
2: b 4 2 c 8
3: a 4 4 c 8
4: a 4 5 c 8
5: c 4 7 c 8
6: c 4 8 c 8
7: b 2 1 b 7
8: a 2 4 b 7
9: c 2 7 b 7
> DT[X, on="y<=foo"] # same as above
x y v i.x i.v
<char> <num> <int> <char> <int>
1: b 4 1 c 8
2: b 4 2 c 8
3: a 4 4 c 8
4: a 4 5 c 8
5: c 4 7 c 8
6: c 4 8 c 8
7: b 2 1 b 7
8: a 2 4 b 7
9: c 2 7 b 7
> DT[X, on=c("y<=foo")] # same as above
x y v i.x i.v
<char> <num> <int> <char> <int>
1: b 4 1 c 8
2: b 4 2 c 8
3: a 4 4 c 8
4: a 4 5 c 8
5: c 4 7 c 8
6: c 4 8 c 8
7: b 2 1 b 7
8: a 2 4 b 7
9: c 2 7 b 7
> DT[X, on=.(y>=foo)] # NEW non-equi join (v1.9.8+)
x y v i.x i.v
<char> <num> <int> <char> <int>
1: b 4 3 c 8
2: a 4 6 c 8
3: c 4 9 c 8
4: b 2 2 b 7
5: b 2 3 b 7
6: a 2 5 b 7
7: a 2 6 b 7
8: c 2 8 b 7
9: c 2 9 b 7
> DT[X, on=.(x, y<=foo)] # NEW non-equi join (v1.9.8+)
x y v i.v
<char> <num> <int> <int>
1: c 4 7 8
2: c 4 8 8
3: b 2 1 7
> DT[X, .(x,y,x.y,v), on=.(x, y>=foo)] # Select x's join columns as well
x y x.y v
<char> <num> <num> <int>
1: c 4 6 9
2: b 2 3 2
3: b 2 6 3
>
> DT[X, on="x", mult="first"] # first row of each group
x y v i.v foo
<char> <num> <int> <int> <num>
1: c 1 7 8 4
2: b 1 1 7 2
> DT[X, on="x", mult="last"] # last row of each group
x y v i.v foo
<char> <num> <int> <int> <num>
1: c 6 9 8 4
2: b 6 3 7 2
> DT[X, sum(v), by=.EACHI, on="x"] # join and eval j for each row in i
x V1
<char> <int>
1: c 24
2: b 6
> DT[X, sum(v)*foo, by=.EACHI, on="x"] # join inherited scope
x V1
<char> <num>
1: c 96
2: b 12
> DT[X, sum(v)*i.v, by=.EACHI, on="x"] # 'i,v' refers to X's v column
x V1
<char> <int>
1: c 192
2: b 42
> DT[X, on=.(x, v>=v), sum(y)*foo, by=.EACHI] # NEW non-equi join with by=.EACHI (v1.9.8+)
x v V1
<char> <int> <num>
1: c 8 36
2: b 7 NA
>
> # setting keys
> kDT = copy(DT) # (deep) copy DT to kDT to work with it.
> setkey(kDT,x) # set a 1-column key. No quotes, for convenience.
> setkeyv(kDT,"x") # same (v in setkeyv stands for vector)
> v="x"
> setkeyv(kDT,v) # same
> haskey(kDT) # TRUE
[1] TRUE
> key(kDT) # "x"
[1] "x"
>
> # fast *keyed* subsets
> kDT["a"] # subset-as-join on *key* column 'x'
Key: <x>
x y v
<char> <num> <int>
1: a 1 4
2: a 3 5
3: a 6 6
> kDT["a", on="x"] # same, being explicit using 'on=' (preferred)
Key: <x>
x y v
<char> <num> <int>
1: a 1 4
2: a 3 5
3: a 6 6
>
> # all together
> kDT[!"a", sum(v), by=.EACHI] # get sum(v) for each i != "a"
Key: <x>
x V1
<char> <int>
1: b 6
2: c 24
>
> # multi-column key
> setkey(kDT,x,y) # 2-column key
> setkeyv(kDT,c("x","y")) # same
>
> # fast *keyed* subsets on multi-column key
> kDT["a"] # join to 1st column of key
Key: <x, y>
x y v
<char> <num> <int>
1: a 1 4
2: a 3 5
3: a 6 6
> kDT["a", on="x"] # on= is optional, but is preferred
Key: <x, y>
x y v
<char> <num> <int>
1: a 1 4
2: a 3 5
3: a 6 6
> kDT[.("a")] # same, .() is an alias for list()
Key: <x, y>
x y v
<char> <num> <int>
1: a 1 4
2: a 3 5
3: a 6 6
> kDT[list("a")] # same
Key: <x, y>
x y v
<char> <num> <int>
1: a 1 4
2: a 3 5
3: a 6 6
> kDT[.("a", 3)] # join to 2 columns
Key: <x, y>
x y v
<char> <num> <int>
1: a 3 5
> kDT[.("a", 3:6)] # join 4 rows (2 missing)
x y v
<char> <int> <int>
1: a 3 5
2: a 4 NA
3: a 5 NA
4: a 6 6
> kDT[.("a", 3:6), nomatch=NULL] # remove missing
Key: <x, y>
x y v
<char> <int> <int>
1: a 3 5
2: a 6 6
> kDT[.("a", 3:6), roll=TRUE] # locf rolling join
x y v
<char> <int> <int>
1: a 3 5
2: a 4 5
3: a 5 5
4: a 6 6
> kDT[.("a", 3:6), roll=Inf] # same as above
x y v
<char> <int> <int>
1: a 3 5
2: a 4 5
3: a 5 5
4: a 6 6
> kDT[.("a", 3:6), roll=-Inf] # nocb rolling join
x y v
<char> <int> <int>
1: a 3 5
2: a 4 6
3: a 5 6
4: a 6 6
> kDT[!.("a")] # not join
Key: <x, y>
x y v
<char> <num> <int>
1: b 1 1
2: b 3 2
3: b 6 3
4: c 1 7
5: c 3 8
6: c 6 9
> kDT[!"a"] # same
Key: <x, y>
x y v
<char> <num> <int>
1: b 1 1
2: b 3 2
3: b 6 3
4: c 1 7
5: c 3 8
6: c 6 9
>
> # more on special symbols, see also ?"special-symbols"
> DT[.N] # last row
x y v
<char> <num> <int>
1: c 6 9
> DT[, .N] # total number of rows in DT
[1] 9
> DT[, .N, by=x] # number of rows in each group
x N
<char> <int>
1: b 3
2: a 3
3: c 3
> DT[, .SD, .SDcols=x:y] # select columns 'x' through 'y'
Index: <x>
x y
<char> <num>
1: b 1
2: b 3
3: b 6
4: a 1
5: a 3
6: a 6
7: c 1
8: c 3
9: c 6
> DT[ , .SD, .SDcols = !x:y] # drop columns 'x' through 'y'
v
<int>
1: 1
2: 2
3: 3
4: 4
5: 5
6: 6
7: 7
8: 8
9: 9
> DT[ , .SD, .SDcols = patterns('^[xv]')] # select columns matching '^x' or '^v'
Index: <x>
x v
<char> <int>
1: b 1
2: b 2
3: b 3
4: a 4
5: a 5
6: a 6
7: c 7
8: c 8
9: c 9
> DT[, .SD[1]] # first row of all columns
x y v
<char> <num> <int>
1: b 1 1
> DT[, .SD[1], by=x] # first row of 'y' and 'v' for each group in 'x'
x y v
<char> <num> <int>
1: b 1 1
2: a 1 4
3: c 1 7
> DT[, c(.N, lapply(.SD, sum)), by=x] # get rows *and* sum columns 'v' and 'y' by group
x N y v
<char> <int> <num> <int>
1: b 3 10 6
2: a 3 10 15
3: c 3 10 24
> DT[, .I[1], by=x] # row number in DT corresponding to each group
x V1
<char> <int>
1: b 1
2: a 4
3: c 7
> DT[, grp := .GRP, by=x] # add a group counter column
Error in `[.data.table`(DT, , `:=`(grp, .GRP), by = x) :
attempt access index 3/3 in VECTOR_ELT
Calls: [ -> [.data.table
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.17.8
Check: tests
Result: ERROR
Running ‘S4.R’
Running ‘autoprint.R’
Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ...4,10d3
<
< Attaching package: 'data.table'
<
< The following object is masked from 'package:base':
<
< %notin%
<
Running ‘froll.R’ [49s/121s]
Running ‘knitr.R’
Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK
Running ‘main.R’ [16s/43s]
Running ‘nafill.R’
Running ‘other.R’
Running ‘programming.R’
Running ‘types.R’
Running the tests in ‘tests/main.R’ failed.
Complete output:
> require(data.table)
Loading required package: data.table
Attaching package: 'data.table'
The following object is masked from 'package:base':
%notin%
>
> test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
getDTthreads(verbose=TRUE):
OpenMP version (_OPENMP) 202011
omp_get_num_procs() 24
R_DATATABLE_NUM_PROCS_PERCENT unset (default 50)
R_DATATABLE_NUM_THREADS unset
R_DATATABLE_THROTTLE unset (default 1024)
omp_get_thread_limit() 2
omp_get_max_threads() 24
OMP_THREAD_LIMIT 2
OMP_NUM_THREADS unset
RestoreAfterFork true
data.table is using 2 threads with throttle==1024. See ?setDTthreads.
test.data.table() running: /data/gannet/ripley/R/packages/tests-clang/data.table.Rcheck/data.table/tests/tests.Rraw.bz2
Test 611.1 produced 1 errors but expected 0
Expected:
Observed: attempt access index 2/2 in VECTOR_ELT
Test 611.2 produced 1 errors but expected 0
Expected:
Observed: attempt access index 2/2 in VECTOR_ELT
Test 611.4 produced 1 errors but expected 0
Expected:
Observed: attempt access index 3/3 in VECTOR_ELT
Test 623.1 produced 1 errors but expected 0
Expected:
Observed: attempt access index 2/2 in VECTOR_ELT
Test 670.1 produced 1 errors but expected 0
Expected:
Observed: attempt access index 2/2 in VECTOR_ELT
Test 670.2 produced 1 errors but expected 0
Expected:
Observed: attempt access index 2/2 in VECTOR_ELT
Test 670.3 produced 0 warnings but expected 1
Expected: The setkey() normally performed by keyby= has been skipped (as if by= was used) because := is being used together with keyby= but the keyby= contains some expressions. To avoid this warning, use by= instead, or provide existing column names to keyby=
Observed:
Test 670.3 produced 1 errors but expected 0
Expected:
Observed: attempt access index 2/2 in VECTOR_ELT
Test 670.4 produced 1 errors but expected 0
Expected:
Observed: attempt access index 2/2 in VECTOR_ELT
Test 689 produced 1 errors but expected 0
Expected:
Observed: attempt access index 1/1 in VECTOR_ELT
Test 690 produced 1 errors but expected 0
Expected:
Observed: attempt access index 1/1 in VECTOR_ELT
Test 730 produced 1 errors but expected 0
Expected:
Observed: attempt access index 3/3 in VECTOR_ELT
Test 731 ran without errors but failed check that x equals y:
> x = DT["d", `:=`(w, 99), by = y]$w
First 0 of 0 (type 'NULL'):
NULL
> y = INT(5, 7, 9, 5, 7, 9, NA, NA, NA)
First 6 of 9 (type 'integer'):
[1] 5 7 9 5 7 9
Test 732 ran without errors but failed check that x equals y:
> x = DT["d", `:=`(w, 99L), by = y]$w
First 0 of 0 (type 'NULL'):
NULL
> y = INT(5, 7, 9, 5, 7, 9, NA, NA, NA)
First 6 of 9 (type 'integer'):
[1] 5 7 9 5 7 9
Test 733 produced 1 errors but expected 0
Expected:
Observed: attempt access index 3/3 in VECTOR_ELT
Test 748.1 produced 1 errors but expected 0
Expected:
Observed: attempt access index 3/3 in VECTOR_ELT
Test 748.2 produced 1 errors but expected 0
Expected:
Observed: attempt access index 3/3 in VECTOR_ELT
Test 749 produced 1 errors but expected 0
Expected:
Observed: attempt access index 2/2 in VECTOR_ELT
Test 750.1 produced 1 errors but expected 0
Expected:
Observed: cannot coerce type 'builtin' to vector of type 'list'
Test 750.2 produced 1 errors but expected 0
Expected:
Observed: cannot coerce type 'builtin' to vector of type 'list'
Test 751.1 produced 1 errors but expected 0
Expected:
Observed: attempt access index 2/2 in VECTOR_ELT
Test 780 produced 1 errors but expected 0
Expected:
Observed: attempt access index 2/2 in VECTOR_ELT
Test 787.1 produced 1 errors but expected 0
Expected:
Observed: attempt access index 2/2 in VECTOR_ELT
Test 787.2 produced 1 errors but expected 0
Expected:
Observed: attempt access index 2/2 in VECTOR_ELT
Test 838 produced 1 errors but expected 0
Expected:
Observed: attempt access index 2/2 in VECTOR_ELT
Test 916 produced 1 errors but expected 0
Expected:
Observed: attempt access index 2/2 in VECTOR_ELT
Error in `[.data.table`(DT, , `:=`(z, .GRP), by = x) :
attempt access index 2/2 in VECTOR_ELT
Thu Dec 18 22:59:10 2025 endian==little, sizeof(long double)==16, longdouble.digits==64, sizeof(pointer)==8, TZ==unset, Sys.timezone()=='Europe/London', Sys.getlocale()=='LC_CTYPE=en_GB.utf8;LC_NUMERIC=C;LC_TIME=en_GB.UTF-8;LC_COLLATE=C;LC_MONETARY=en_GB.UTF-8;LC_MESSAGES=en_GB.UTF-8;LC_PAPER=en_GB.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_GB.UTF-8;LC_IDENTIFICATION=C', l10n_info()=='MBCS=TRUE; UTF-8=TRUE; Latin-1=FALSE; codeset=UTF-8', getDTthreads()=='OpenMP version (_OPENMP)==202011; omp_get_num_procs()==24; R_DATATABLE_NUM_PROCS_PERCENT==unset (default 50); R_DATATABLE_NUM_THREADS==unset; R_DATATABLE_THROTTLE==unset (default 1024); omp_get_thread_limit()==2; omp_get_max_threads()==24; OMP_THREAD_LIMIT==2; OMP_NUM_THREADS==unset; RestoreAfterFork==true; data.table is using 2 threads with throttle==1024. See ?setDTthreads.', .libPaths()=='/tmp/RtmpYGZYI9/RLIBS_1f3f326f10855f','/data/gannet/ripley/R/R-clang/library', zlibVersion()==1.3.1.zlib-ng ZLIB_VERSION==1.3.1.zlib-ng
Error in test.data.table() :
Failed in 38.8s elapsed (14.3s cpu) after test 978.3 before the next test() call in /data/gannet/ripley/R/packages/tests-clang/data.table.Rcheck/data.table/tests/tests.Rraw.bz2
Calls: test.data.table -> stopf -> raise_condition -> signal
Execution halted
Running the tests in ‘tests/programming.R’ failed.
Complete output:
> require(data.table)
Loading required package: data.table
Attaching package: 'data.table'
The following object is masked from 'package:base':
%notin%
> test.data.table(script="programming.Rraw")
getDTthreads(verbose=TRUE):
OpenMP version (_OPENMP) 202011
omp_get_num_procs() 24
R_DATATABLE_NUM_PROCS_PERCENT unset (default 50)
R_DATATABLE_NUM_THREADS unset
R_DATATABLE_THROTTLE unset (default 1024)
omp_get_thread_limit() 2
omp_get_max_threads() 24
OMP_THREAD_LIMIT 2
OMP_NUM_THREADS unset
RestoreAfterFork true
data.table is using 2 threads with throttle==1024. See ?setDTthreads.
test.data.table() running: /data/gannet/ripley/R/packages/tests-clang/data.table.Rcheck/data.table/tests/programming.Rraw.bz2
Error in `[.data.table`(ydt, , `:=`(date, seq_len(.N)), by = symbol) :
attempt access index 1/1 in VECTOR_ELT
Thu Dec 18 22:59:22 2025 endian==little, sizeof(long double)==16, longdouble.digits==64, sizeof(pointer)==8, TZ==unset, Sys.timezone()=='Europe/London', Sys.getlocale()=='LC_CTYPE=en_GB.utf8;LC_NUMERIC=C;LC_TIME=en_GB.UTF-8;LC_COLLATE=C;LC_MONETARY=en_GB.UTF-8;LC_MESSAGES=en_GB.UTF-8;LC_PAPER=en_GB.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_GB.UTF-8;LC_IDENTIFICATION=C', l10n_info()=='MBCS=TRUE; UTF-8=TRUE; Latin-1=FALSE; codeset=UTF-8', getDTthreads()=='OpenMP version (_OPENMP)==202011; omp_get_num_procs()==24; R_DATATABLE_NUM_PROCS_PERCENT==unset (default 50); R_DATATABLE_NUM_THREADS==unset; R_DATATABLE_THROTTLE==unset (default 1024); omp_get_thread_limit()==2; omp_get_max_threads()==24; OMP_THREAD_LIMIT==2; OMP_NUM_THREADS==unset; RestoreAfterFork==true; data.table is using 2 threads with throttle==1024. See ?setDTthreads.', .libPaths()=='/tmp/RtmpYGZYI9/RLIBS_1f3f326f10855f','/data/gannet/ripley/R/R-clang/library', zlibVersion()==1.3.1.zlib-ng ZLIB_VERSION==1.3.1.zlib-ng
Error in test.data.table(script = "programming.Rraw") :
Failed in 1.850s elapsed (1.356s cpu) after test 101.17 before the next test() call in /data/gannet/ripley/R/packages/tests-clang/data.table.Rcheck/data.table/tests/programming.Rraw.bz2
Calls: test.data.table -> stopf -> raise_condition -> signal
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.17.8
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘datatable-benchmarking.Rmd’ using knitr
--- finished re-building ‘datatable-benchmarking.Rmd’
--- re-building ‘datatable-faq.Rmd’ using knitr
--- finished re-building ‘datatable-faq.Rmd’
--- re-building ‘datatable-importing.Rmd’ using knitr
--- finished re-building ‘datatable-importing.Rmd’
--- re-building ‘datatable-intro.Rmd’ using knitr
--- finished re-building ‘datatable-intro.Rmd’
--- re-building ‘datatable-joins.Rmd’ using knitr
Quitting from datatable-joins.Rmd:667-673 [unnamed-chunk-42]
Error: processing vignette 'datatable-joins.Rmd' failed with diagnostics:
attempt access index 5/5 in VECTOR_ELT
--- failed re-building ‘datatable-joins.Rmd’
--- re-building ‘datatable-keys-fast-subset.Rmd’ using knitr
--- finished re-building ‘datatable-keys-fast-subset.Rmd’
--- re-building ‘datatable-programming.Rmd’ using knitr
--- finished re-building ‘datatable-programming.Rmd’
--- re-building ‘datatable-reference-semantics.Rmd’ using knitr
--- finished re-building ‘datatable-reference-semantics.Rmd’
--- re-building ‘datatable-reshape.Rmd’ using knitr
--- finished re-building ‘datatable-reshape.Rmd’
--- re-building ‘datatable-sd-usage.Rmd’ using knitr
Quitting from datatable-sd-usage.Rmd:199-206 [conditional_join]
Error: processing vignette 'datatable-sd-usage.Rmd' failed with diagnostics:
attempt access index 30/30 in VECTOR_ELT
--- failed re-building ‘datatable-sd-usage.Rmd’
--- re-building ‘datatable-secondary-indices-and-auto-indexing.Rmd’ using knitr
--- finished re-building ‘datatable-secondary-indices-and-auto-indexing.Rmd’
SUMMARY: processing the following files failed:
‘datatable-joins.Rmd’ ‘datatable-sd-usage.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.17.8
Check: tests
Result: ERROR
Running ‘S4.R’
Running ‘autoprint.R’
Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ...4,10d3
<
< Attaching package: 'data.table'
<
< The following object is masked from 'package:base':
<
< %notin%
<
Running ‘froll.R’ [42s/129s]
Running ‘knitr.R’
Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK
Running ‘main.R’ [15s/34s]
Running ‘nafill.R’
Running ‘other.R’
Running ‘programming.R’
Running ‘types.R’
Running the tests in ‘tests/main.R’ failed.
Complete output:
> require(data.table)
Loading required package: data.table
Attaching package: 'data.table'
The following object is masked from 'package:base':
%notin%
>
> test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
getDTthreads(verbose=TRUE):
OpenMP version (_OPENMP) 201511
omp_get_num_procs() 24
R_DATATABLE_NUM_PROCS_PERCENT unset (default 50)
R_DATATABLE_NUM_THREADS unset
R_DATATABLE_THROTTLE unset (default 1024)
omp_get_thread_limit() 2
omp_get_max_threads() 24
OMP_THREAD_LIMIT 2
OMP_NUM_THREADS unset
RestoreAfterFork true
data.table is using 2 threads with throttle==1024. See ?setDTthreads.
test.data.table() running: /data/gannet/ripley/R/packages/tests-devel/data.table.Rcheck/data.table/tests/tests.Rraw.bz2
Test 611.1 produced 1 errors but expected 0
Expected:
Observed: attempt access index 2/2 in VECTOR_ELT
Test 611.2 produced 1 errors but expected 0
Expected:
Observed: attempt access index 2/2 in VECTOR_ELT
Test 611.4 produced 1 errors but expected 0
Expected:
Observed: attempt access index 3/3 in VECTOR_ELT
Test 623.1 produced 1 errors but expected 0
Expected:
Observed: attempt access index 2/2 in VECTOR_ELT
Test 670.1 produced 1 errors but expected 0
Expected:
Observed: attempt access index 2/2 in VECTOR_ELT
Test 670.2 produced 1 errors but expected 0
Expected:
Observed: attempt access index 2/2 in VECTOR_ELT
Test 670.3 produced 0 warnings but expected 1
Expected: The setkey() normally performed by keyby= has been skipped (as if by= was used) because := is being used together with keyby= but the keyby= contains some expressions. To avoid this warning, use by= instead, or provide existing column names to keyby=
Observed:
Test 670.3 produced 1 errors but expected 0
Expected:
Observed: attempt access index 2/2 in VECTOR_ELT
Test 670.4 produced 1 errors but expected 0
Expected:
Observed: attempt access index 2/2 in VECTOR_ELT
Test 689 produced 1 errors but expected 0
Expected:
Observed: attempt access index 1/1 in VECTOR_ELT
Test 690 produced 1 errors but expected 0
Expected:
Observed: attempt access index 1/1 in VECTOR_ELT
Test 730 produced 1 errors but expected 0
Expected:
Observed: attempt access index 3/3 in VECTOR_ELT
Test 731 ran without errors but failed check that x equals y:
> x = DT["d", `:=`(w, 99), by = y]$w
First 0 of 0 (type 'NULL'):
NULL
> y = INT(5, 7, 9, 5, 7, 9, NA, NA, NA)
First 6 of 9 (type 'integer'):
[1] 5 7 9 5 7 9
Test 732 ran without errors but failed check that x equals y:
> x = DT["d", `:=`(w, 99L), by = y]$w
First 0 of 0 (type 'NULL'):
NULL
> y = INT(5, 7, 9, 5, 7, 9, NA, NA, NA)
First 6 of 9 (type 'integer'):
[1] 5 7 9 5 7 9
Test 733 produced 1 errors but expected 0
Expected:
Observed: attempt access index 3/3 in VECTOR_ELT
Test 748.1 produced 1 errors but expected 0
Expected:
Observed: attempt access index 3/3 in VECTOR_ELT
Test 748.2 produced 1 errors but expected 0
Expected:
Observed: attempt access index 3/3 in VECTOR_ELT
Test 749 produced 1 errors but expected 0
Expected:
Observed: attempt access index 2/2 in VECTOR_ELT
Test 750.1 produced 1 errors but expected 0
Expected:
Observed: cannot coerce type 'builtin' to vector of type 'list'
Test 750.2 produced 1 errors but expected 0
Expected:
Observed: cannot coerce type 'builtin' to vector of type 'list'
Test 751.1 produced 1 errors but expected 0
Expected:
Observed: attempt access index 2/2 in VECTOR_ELT
Test 780 produced 1 errors but expected 0
Expected:
Observed: attempt access index 2/2 in VECTOR_ELT
Test 787.1 produced 1 errors but expected 0
Expected:
Observed: attempt access index 2/2 in VECTOR_ELT
Test 787.2 produced 1 errors but expected 0
Expected:
Observed: attempt access index 2/2 in VECTOR_ELT
Test 838 produced 1 errors but expected 0
Expected:
Observed: attempt access index 2/2 in VECTOR_ELT
Test 916 produced 1 errors but expected 0
Expected:
Observed: attempt access index 2/2 in VECTOR_ELT
Error in `[.data.table`(DT, , `:=`(z, .GRP), by = x) :
attempt access index 2/2 in VECTOR_ELT
Fri Dec 19 02:23:21 2025 endian==little, sizeof(long double)==16, longdouble.digits==64, sizeof(pointer)==8, TZ==unset, Sys.timezone()=='Europe/London', Sys.getlocale()=='LC_CTYPE=en_GB.utf8;LC_NUMERIC=C;LC_TIME=en_GB.UTF-8;LC_COLLATE=C;LC_MONETARY=en_GB.UTF-8;LC_MESSAGES=en_GB.UTF-8;LC_PAPER=en_GB.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_GB.UTF-8;LC_IDENTIFICATION=C', l10n_info()=='MBCS=TRUE; UTF-8=TRUE; Latin-1=FALSE; codeset=UTF-8', getDTthreads()=='OpenMP version (_OPENMP)==201511; omp_get_num_procs()==24; R_DATATABLE_NUM_PROCS_PERCENT==unset (default 50); R_DATATABLE_NUM_THREADS==unset; R_DATATABLE_THROTTLE==unset (default 1024); omp_get_thread_limit()==2; omp_get_max_threads()==24; OMP_THREAD_LIMIT==2; OMP_NUM_THREADS==unset; RestoreAfterFork==true; data.table is using 2 threads with throttle==1024. See ?setDTthreads.', .libPaths()=='/data/gannet/ripley/R/packages/tests-devel/data.table.Rcheck','/data/gannet/ripley/R/test-dev','/data/gannet/ripley/R/test-BioCdata','/data/gannet/ripley/R/R-devel/library', zlibVersion()==1.3.1.zlib-ng ZLIB_VERSION==1.3.1.zlib-ng
Error in test.data.table() :
Failed in 31.9s elapsed (13.3s cpu) after test 978.3 before the next test() call in /data/gannet/ripley/R/packages/tests-devel/data.table.Rcheck/data.table/tests/tests.Rraw.bz2
Calls: test.data.table -> stopf -> raise_condition -> signal
Execution halted
Running the tests in ‘tests/programming.R’ failed.
Complete output:
> require(data.table)
Loading required package: data.table
Attaching package: 'data.table'
The following object is masked from 'package:base':
%notin%
> test.data.table(script="programming.Rraw")
getDTthreads(verbose=TRUE):
OpenMP version (_OPENMP) 201511
omp_get_num_procs() 24
R_DATATABLE_NUM_PROCS_PERCENT unset (default 50)
R_DATATABLE_NUM_THREADS unset
R_DATATABLE_THROTTLE unset (default 1024)
omp_get_thread_limit() 2
omp_get_max_threads() 24
OMP_THREAD_LIMIT 2
OMP_NUM_THREADS unset
RestoreAfterFork true
data.table is using 2 threads with throttle==1024. See ?setDTthreads.
test.data.table() running: /data/gannet/ripley/R/packages/tests-devel/data.table.Rcheck/data.table/tests/programming.Rraw.bz2
Error in `[.data.table`(ydt, , `:=`(date, seq_len(.N)), by = symbol) :
attempt access index 1/1 in VECTOR_ELT
Fri Dec 19 02:23:35 2025 endian==little, sizeof(long double)==16, longdouble.digits==64, sizeof(pointer)==8, TZ==unset, Sys.timezone()=='Europe/London', Sys.getlocale()=='LC_CTYPE=en_GB.utf8;LC_NUMERIC=C;LC_TIME=en_GB.UTF-8;LC_COLLATE=C;LC_MONETARY=en_GB.UTF-8;LC_MESSAGES=en_GB.UTF-8;LC_PAPER=en_GB.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_GB.UTF-8;LC_IDENTIFICATION=C', l10n_info()=='MBCS=TRUE; UTF-8=TRUE; Latin-1=FALSE; codeset=UTF-8', getDTthreads()=='OpenMP version (_OPENMP)==201511; omp_get_num_procs()==24; R_DATATABLE_NUM_PROCS_PERCENT==unset (default 50); R_DATATABLE_NUM_THREADS==unset; R_DATATABLE_THROTTLE==unset (default 1024); omp_get_thread_limit()==2; omp_get_max_threads()==24; OMP_THREAD_LIMIT==2; OMP_NUM_THREADS==unset; RestoreAfterFork==true; data.table is using 2 threads with throttle==1024. See ?setDTthreads.', .libPaths()=='/data/gannet/ripley/R/packages/tests-devel/data.table.Rcheck','/data/gannet/ripley/R/test-dev','/data/gannet/ripley/R/test-BioCdata','/data/gannet/ripley/R/R-devel/library', zlibVersion()==1.3.1.zlib-ng ZLIB_VERSION==1.3.1.zlib-ng
Error in test.data.table(script = "programming.Rraw") :
Failed in 3.757s elapsed (1.212s cpu) after test 101.17 before the next test() call in /data/gannet/ripley/R/packages/tests-devel/data.table.Rcheck/data.table/tests/programming.Rraw.bz2
Calls: test.data.table -> stopf -> raise_condition -> signal
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.17.8
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘datatable-benchmarking.Rmd’ using knitr
--- finished re-building ‘datatable-benchmarking.Rmd’
--- re-building ‘datatable-faq.Rmd’ using knitr
--- finished re-building ‘datatable-faq.Rmd’
--- re-building ‘datatable-importing.Rmd’ using knitr
--- finished re-building ‘datatable-importing.Rmd’
--- re-building ‘datatable-intro.Rmd’ using knitr
--- finished re-building ‘datatable-intro.Rmd’
--- re-building ‘datatable-joins.Rmd’ using knitr
Quitting from datatable-joins.Rmd:667-673 [unnamed-chunk-42]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 5/5 in VECTOR_ELT
---
Backtrace:
▆
1. ├─...[]
2. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'datatable-joins.Rmd' failed with diagnostics:
attempt access index 5/5 in VECTOR_ELT
--- failed re-building ‘datatable-joins.Rmd’
--- re-building ‘datatable-keys-fast-subset.Rmd’ using knitr
--- finished re-building ‘datatable-keys-fast-subset.Rmd’
--- re-building ‘datatable-programming.Rmd’ using knitr
--- finished re-building ‘datatable-programming.Rmd’
--- re-building ‘datatable-reference-semantics.Rmd’ using knitr
--- finished re-building ‘datatable-reference-semantics.Rmd’
--- re-building ‘datatable-reshape.Rmd’ using knitr
--- finished re-building ‘datatable-reshape.Rmd’
--- re-building ‘datatable-sd-usage.Rmd’ using knitr
Quitting from datatable-sd-usage.Rmd:199-206 [conditional_join]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 30/30 in VECTOR_ELT
---
Backtrace:
▆
1. ├─...[]
2. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'datatable-sd-usage.Rmd' failed with diagnostics:
attempt access index 30/30 in VECTOR_ELT
--- failed re-building ‘datatable-sd-usage.Rmd’
--- re-building ‘datatable-secondary-indices-and-auto-indexing.Rmd’ using knitr
--- finished re-building ‘datatable-secondary-indices-and-auto-indexing.Rmd’
SUMMARY: processing the following files failed:
‘datatable-joins.Rmd’ ‘datatable-sd-usage.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.17.8
Check: compiled code
Result: WARN
File 'data.table/libs/x64/data_table.dll':
Found non-API calls to R: 'OBJECT', 'SETLENGTH', 'SET_GROWABLE_BIT',
'SET_OBJECT', 'SET_TRUELENGTH', 'TRUELENGTH'
This entry point may be removed soon:
'OBJECT'
Compiled code should not call non-API entry points in R.
See 'Writing portable packages' in the 'Writing R Extensions' manual,
and section 'Moving into C API compliance' for issues with the use of
non-API entry points.
Flavor: r-devel-windows-x86_64
Version: 1.17.8
Check: tests
Result: NOTE
Running 'S4.R' [1s]
Running 'autoprint.R' [1s]
Comparing 'autoprint.Rout' to 'autoprint.Rout.save' ...4,10d3
<
< Attaching package: 'data.table'
<
< The following object is masked from 'package:base':
<
< %notin%
<
Running 'froll.R' [18s]
Running 'knitr.R' [1s]
Comparing 'knitr.Rout' to 'knitr.Rout.save' ... OK
Running 'main.R' [470s]
Running 'nafill.R' [1s]
Running 'other.R' [0s]
Running 'programming.R' [1s]
Running 'types.R' [0s]
Flavor: r-devel-windows-x86_64
Version: 1.17.8
Check: compiled code
Result: NOTE
File ‘data.table/libs/data_table.so’:
Found non-API calls to R: ‘OBJECT’, ‘SETLENGTH’, ‘SET_GROWABLE_BIT’,
‘SET_TRUELENGTH’, ‘TRUELENGTH’
Compiled code should not call non-API entry points in R.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64
Version: 1.17.8
Check: compiled code
Result: NOTE
File 'data.table/libs/x64/data_table.dll':
Found non-API calls to R: 'OBJECT', 'SETLENGTH', 'SET_GROWABLE_BIT',
'SET_TRUELENGTH', 'TRUELENGTH'
Compiled code should not call non-API entry points in R.
See 'Writing portable packages' in the 'Writing R Extensions' manual,
and section 'Moving into C API compliance' for issues with the use of
non-API entry points.
Flavor: r-release-windows-x86_64
Version: 1.17.8
Check: installed package size
Result: NOTE
installed size is 6.3Mb
sub-directories of 1Mb or more:
libs 1.8Mb
po 1.5Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64