Last updated on 2026-04-25 20:50:25 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.2.3 | 53.03 | 425.14 | 478.17 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.2.3 | 33.59 | 267.21 | 300.80 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.2.3 | 91.00 | 697.08 | 788.08 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.2.3 | 90.00 | 692.88 | 782.88 | OK | |
| r-patched-linux-x86_64 | 1.2.3 | 55.46 | 399.96 | 455.42 | OK | |
| r-release-linux-x86_64 | 1.2.3 | 46.86 | 375.23 | 422.09 | OK | |
| r-release-macos-arm64 | 1.2.3 | 11.00 | 83.00 | 94.00 | OK | |
| r-release-macos-x86_64 | 1.2.3 | 33.00 | 334.00 | 367.00 | OK | |
| r-release-windows-x86_64 | 1.2.3 | 52.00 | 430.00 | 482.00 | OK | |
| r-oldrel-macos-arm64 | 1.2.3 | 4.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 1.2.3 | 39.00 | 383.00 | 422.00 | ERROR | |
| r-oldrel-windows-x86_64 | 1.2.3 | 78.00 | 594.00 | 672.00 | OK |
Version: 1.2.3
Check: package dependencies
Result: ERROR
Packages required but not available: 'SNPRelate', 'snpStats'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-oldrel-macos-arm64
Version: 1.2.3
Check: examples
Result: ERROR
Running examples in ‘dartR.base-Ex.R’ failed
The error most likely occurred in:
> ### Name: gl.filter.ld
> ### Title: Filters loci based on linkage disequilibrium (LD)
> ### Aliases: gl.filter.ld
>
> ### ** Examples
>
> if ((requireNamespace("snpStats", quietly = TRUE)) & (requireNamespace("fields", quietly = TRUE))) {
+ test <- gl.filter.callrate(platypus.gl, threshold = 1)
+ test <- gl.filter.monomorphs(test)
+ report <- gl.report.ld.map(test)
+ res <- gl.filter.ld(x=test,ld.report = report)
+ }
Starting gl.filter.callrate
Processing genlight object with SNP data
Warning: data include loci that are scored NA across all individuals.
Consider filtering using gl <- gl.filter.allna(gl)
Warning: Data may include monomorphic loci in call rate
calculations for filtering
Recalculating Call Rate
Removing loci based on Call Rate, threshold = 1
Completed: gl.filter.callrate
Starting gl.filter.monomorphs
Processing genlight object with SNP data
Identifying monomorphic loci
Removing monomorphic loci and loci with all missing
data
Completed: gl.filter.monomorphs
Starting gl.report.ld.map
Processing genlight object with SNP data
There is no information in the chromosome/position slot of the genlight object.
Assigning the same chromosome ('1') to all the SNPs in the dataset.
Assigning a sequence from 1 to n loci as the position of each SNP.
Calculating LD for all possible SNP pair combinations Calculating pairwise LD in population SEVERN_ABOVE
*** caught segfault ***
address 0x1, cause 'memory not mapped'
Traceback:
1: snpStats::ld(genotype_loci, genotype_loci, stats = ld.stat)
2: gl.report.ld.map(test)
An irrecoverable exception occurred. R is aborting now ...
Flavor: r-oldrel-macos-x86_64