Last updated on 2025-12-20 11:50:18 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.7 | 35.96 | 232.81 | 268.77 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.0.7 | 22.70 | 168.96 | 191.66 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.0.7 | 65.00 | 385.98 | 450.98 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 1.0.7 | 61.00 | 978.62 | 1039.62 | OK | |
| r-devel-windows-x86_64 | 1.0.7 | 32.00 | 256.00 | 288.00 | OK | --no-vignettes |
| r-patched-linux-x86_64 | 1.0.7 | 37.69 | 623.79 | 661.48 | OK | |
| r-release-linux-x86_64 | 1.0.7 | 38.80 | 621.02 | 659.82 | OK | |
| r-release-macos-arm64 | 1.0.7 | OK | ||||
| r-release-macos-x86_64 | 1.0.7 | 13.00 | ERROR | |||
| r-release-windows-x86_64 | 1.0.7 | 29.00 | 228.00 | 257.00 | OK | --no-vignettes |
| r-oldrel-macos-arm64 | 1.0.7 | OK | ||||
| r-oldrel-macos-x86_64 | 1.0.7 | 12.00 | ERROR | |||
| r-oldrel-windows-x86_64 | 1.0.7 | 1.00 | 14.00 | 15.00 | ERROR | --no-vignettes |
Version: 1.0.7
Check: examples
Result: ERROR
Running examples in ‘ctsemOMX-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ctGenerateFromFit
> ### Title: Generates data according to the model estimated in a ctsemFit
> ### object.
> ### Aliases: ctGenerateFromFit
>
> ### ** Examples
>
>
> data(AnomAuth)
> AnomAuthmodel <- ctModel(LAMBDA = matrix(c(1, 0, 0, 1), nrow = 2, ncol = 2),
+ Tpoints = 5, n.latent = 2, n.manifest = 2, MANIFESTVAR=diag(0, 2))
Type "omx" is still supported but requires ctsemOMX package installation. "ct" or "dt" are recommended types.
CINT specified via single value -- filling 2 * 1 matrix:
[,1]
[1,] "0"
[2,] "0"
> AnomAuthfit <- ctFit(AnomAuth, AnomAuthmodel)
wide format data detected
Running ctsemCarefulFit with 14 parameters
Running ctsem with 14 parameters
Beginning initial fit attempt
Running ctsem with 14 parameters
Lowest minimum so far: 23415.9290488409
Solution found
Solution found! Final fit=23415.929 (started at 85069.46) (1 attempt(s): 1 valid, 0 errors)
>
> dwide <- ctGenerateFromFit(AnomAuthfit,timestep=1,n.subjects=5,wide=TRUE)
Error in `[.data.table`(data_long, , `:=`(discrete.time.point = 1:.N), :
attempt access index 4/4 in VECTOR_ELT
Calls: ctGenerateFromFit ... withCallingHandlers -> ctGenerate -> ctLongToWide -> [ -> [.data.table
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.0.7
Check: tests
Result: ERROR
Running ‘testthat.R’ [14s/17s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(ctsemOMX)
Loading required package: ctsem
Loading required package: Rcpp
ctsem also changes in time, for manual run ctDocs(), for blog see https://cdriver.netlify.app/, for citation info run citation('ctsem'), for original OpenMx functionality install.packages('ctsemOMX'), and for discussion https://github.com/cdriveraus/ctsem/discussions
Loading required package: OpenMx
Attaching package: 'ctsemOMX'
The following objects are masked from 'package:ctsem':
ctFit, ctIndplot
> pdf(NULL)
> test_check("ctsemOMX")
Saving _problems/test-intervalise-12.R
Saving _problems/test-kalmanVram-35.R
Saving _problems/test-reshaping-30.R
[ FAIL 3 | WARN 0 | SKIP 3 | PASS 0 ]
══ Skipped tests (3) ═══════════════════════════════════════════════════════════
• empty test (3): , ,
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-intervalise.R:10:3'): intervals ────────────────────────────────
Error in ``[.data.table`(data_long, , `:=`(discrete.time.point = 1:.N), by = id)`: attempt access index 8/8 in VECTOR_ELT
Backtrace:
▆
1. └─ctsem::ctLongToWide(...) at test-intervalise.R:10:3
2. ├─data_long[, `:=`(discrete.time.point = 1:.N), by = id]
3. └─data.table:::`[.data.table`(...)
── Error ('test-kalmanVram.R:35:1'): time calc ─────────────────────────────────
Error in ``[.data.table`(data_long, , `:=`(discrete.time.point = 1:.N), by = id)`: attempt access index 7/7 in VECTOR_ELT
Backtrace:
▆
1. └─ctsemOMX::ctRefineTo(...) at test-kalmanVram.R:35:1
2. └─ctsemOMX::ctFit(datawide, m, nofit = TRUE, ...)
3. └─ctsem::ctLongToWide(...)
4. ├─data_long[, `:=`(discrete.time.point = 1:.N), by = id]
5. └─data.table:::`[.data.table`(...)
── Error ('test-reshaping.R:29:3'): reshaping1 ─────────────────────────────────
Error in ``[.data.table`(data_long, , `:=`(discrete.time.point = 1:.N), by = id)`: attempt access index 8/8 in VECTOR_ELT
Backtrace:
▆
1. └─ctsem::ctLongToWide(...) at test-reshaping.R:29:3
2. ├─data_long[, `:=`(discrete.time.point = 1:.N), by = id]
3. └─data.table:::`[.data.table`(...)
[ FAIL 3 | WARN 0 | SKIP 3 | PASS 0 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.0.7
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘ctsemOMX.rnw’ using knitr
Quitting from ctsemOMX.rnw:315-323 [longformatconversion]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 8/8 in VECTOR_ELT
---
Backtrace:
x
1. \-ctsem::ctLongToWide(...)
2. +-data_long[, `:=`(discrete.time.point = 1:.N), by = id]
3. \-data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'ctsemOMX.rnw' failed with diagnostics:
attempt access index 8/8 in VECTOR_ELT
--- failed re-building ‘ctsemOMX.rnw’
SUMMARY: processing the following file failed:
‘ctsemOMX.rnw’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.0.7
Check: tests
Result: ERROR
Running ‘testthat.R’ [11s/16s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(ctsemOMX)
Loading required package: ctsem
Loading required package: Rcpp
ctsem also changes in time, for manual run ctDocs(), for blog see https://cdriver.netlify.app/, for citation info run citation('ctsem'), for original OpenMx functionality install.packages('ctsemOMX'), and for discussion https://github.com/cdriveraus/ctsem/discussions
Loading required package: OpenMx
Attaching package: 'ctsemOMX'
The following objects are masked from 'package:ctsem':
ctFit, ctIndplot
> pdf(NULL)
> test_check("ctsemOMX")
Saving _problems/test-intervalise-12.R
Saving _problems/test-kalmanVram-35.R
Saving _problems/test-reshaping-30.R
[ FAIL 3 | WARN 0 | SKIP 3 | PASS 0 ]
══ Skipped tests (3) ═══════════════════════════════════════════════════════════
• empty test (3): , ,
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-intervalise.R:10:3'): intervals ────────────────────────────────
Error in ``[.data.table`(data_long, , `:=`(discrete.time.point = 1:.N), by = id)`: attempt access index 8/8 in VECTOR_ELT
Backtrace:
▆
1. └─ctsem::ctLongToWide(...) at test-intervalise.R:10:3
2. ├─data_long[, `:=`(discrete.time.point = 1:.N), by = id]
3. └─data.table:::`[.data.table`(...)
── Error ('test-kalmanVram.R:35:1'): time calc ─────────────────────────────────
Error in ``[.data.table`(data_long, , `:=`(discrete.time.point = 1:.N), by = id)`: attempt access index 7/7 in VECTOR_ELT
Backtrace:
▆
1. └─ctsemOMX::ctRefineTo(...) at test-kalmanVram.R:35:1
2. └─ctsemOMX::ctFit(datawide, m, nofit = TRUE, ...)
3. └─ctsem::ctLongToWide(...)
4. ├─data_long[, `:=`(discrete.time.point = 1:.N), by = id]
5. └─data.table:::`[.data.table`(...)
── Error ('test-reshaping.R:29:3'): reshaping1 ─────────────────────────────────
Error in ``[.data.table`(data_long, , `:=`(discrete.time.point = 1:.N), by = id)`: attempt access index 8/8 in VECTOR_ELT
Backtrace:
▆
1. └─ctsem::ctLongToWide(...) at test-reshaping.R:29:3
2. ├─data_long[, `:=`(discrete.time.point = 1:.N), by = id]
3. └─data.table:::`[.data.table`(...)
[ FAIL 3 | WARN 0 | SKIP 3 | PASS 0 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.7
Check: examples
Result: ERROR
Running examples in ‘ctsemOMX-Ex.R’ failed
The error most likely occurred in:
> ### Name: ctGenerateFromFit
> ### Title: Generates data according to the model estimated in a ctsemFit
> ### object.
> ### Aliases: ctGenerateFromFit
>
> ### ** Examples
>
>
> data(AnomAuth)
> AnomAuthmodel <- ctModel(LAMBDA = matrix(c(1, 0, 0, 1), nrow = 2, ncol = 2),
+ Tpoints = 5, n.latent = 2, n.manifest = 2, MANIFESTVAR=diag(0, 2))
Type "omx" is still supported but requires ctsemOMX package installation. "ct" or "dt" are recommended types.
CINT specified via single value -- filling 2 * 1 matrix:
[,1]
[1,] "0"
[2,] "0"
> AnomAuthfit <- ctFit(AnomAuth, AnomAuthmodel)
wide format data detected
Running ctsemCarefulFit with 14 parameters
Running ctsem with 14 parameters
Beginning initial fit attempt
Running ctsem with 14 parameters
Lowest minimum so far: 23415.9290488409
Solution found
Solution found! Final fit=23415.929 (started at 85069.46) (1 attempt(s): 1 valid, 0 errors)
>
> dwide <- ctGenerateFromFit(AnomAuthfit,timestep=1,n.subjects=5,wide=TRUE)
Error in `[.data.table`(data_long, , `:=`(discrete.time.point = 1:.N), :
attempt access index 4/4 in VECTOR_ELT
Calls: ctGenerateFromFit ... withCallingHandlers -> ctGenerate -> ctLongToWide -> [ -> [.data.table
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.0.7
Check: tests
Result: ERROR
Running ‘testthat.R’ [23s/63s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(ctsemOMX)
Loading required package: ctsem
Loading required package: Rcpp
ctsem also changes in time, for manual run ctDocs(), for blog see https://cdriver.netlify.app/, for citation info run citation('ctsem'), for original OpenMx functionality install.packages('ctsemOMX'), and for discussion https://github.com/cdriveraus/ctsem/discussions
Loading required package: OpenMx
To take full advantage of multiple cores, use:
mxOption(key='Number of Threads', value=parallel::detectCores()) #now
Sys.setenv(OMP_NUM_THREADS=parallel::detectCores()) #before library(OpenMx)
Attaching package: 'ctsemOMX'
The following objects are masked from 'package:ctsem':
ctFit, ctIndplot
> pdf(NULL)
> test_check("ctsemOMX")
Saving _problems/test-intervalise-12.R
Saving _problems/test-kalmanVram-35.R
Saving _problems/test-reshaping-30.R
[ FAIL 3 | WARN 0 | SKIP 3 | PASS 0 ]
══ Skipped tests (3) ═══════════════════════════════════════════════════════════
• empty test (3): , ,
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-intervalise.R:10:3'): intervals ────────────────────────────────
Error in ``[.data.table`(data_long, , `:=`(discrete.time.point = 1:.N), by = id)`: attempt access index 8/8 in VECTOR_ELT
Backtrace:
▆
1. └─ctsem::ctLongToWide(...) at test-intervalise.R:10:3
2. ├─data_long[, `:=`(discrete.time.point = 1:.N), by = id]
3. └─data.table:::`[.data.table`(...)
── Error ('test-kalmanVram.R:35:1'): time calc ─────────────────────────────────
Error in ``[.data.table`(data_long, , `:=`(discrete.time.point = 1:.N), by = id)`: attempt access index 7/7 in VECTOR_ELT
Backtrace:
▆
1. └─ctsemOMX::ctRefineTo(...) at test-kalmanVram.R:35:1
2. └─ctsemOMX::ctFit(datawide, m, nofit = TRUE, ...)
3. └─ctsem::ctLongToWide(...)
4. ├─data_long[, `:=`(discrete.time.point = 1:.N), by = id]
5. └─data.table:::`[.data.table`(...)
── Error ('test-reshaping.R:29:3'): reshaping1 ─────────────────────────────────
Error in ``[.data.table`(data_long, , `:=`(discrete.time.point = 1:.N), by = id)`: attempt access index 8/8 in VECTOR_ELT
Backtrace:
▆
1. └─ctsem::ctLongToWide(...) at test-reshaping.R:29:3
2. ├─data_long[, `:=`(discrete.time.point = 1:.N), by = id]
3. └─data.table:::`[.data.table`(...)
[ FAIL 3 | WARN 0 | SKIP 3 | PASS 0 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.0.7
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘ctsemOMX.rnw’ using knitr
Quitting from ctsemOMX.rnw:315-323 [longformatconversion]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 8/8 in VECTOR_ELT
---
Backtrace:
x
1. \-ctsem::ctLongToWide(...)
2. +-data_long[, `:=`(discrete.time.point = 1:.N), by = id]
3. \-data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'ctsemOMX.rnw' failed with diagnostics:
attempt access index 8/8 in VECTOR_ELT
--- failed re-building ‘ctsemOMX.rnw’
SUMMARY: processing the following file failed:
‘ctsemOMX.rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.0.7
Check: package dependencies
Result: ERROR
Package required but not available: ‘ctsem’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavors: r-release-macos-x86_64, r-oldrel-macos-x86_64
Version: 1.0.7
Flags: --no-vignettes
Check: package dependencies
Result: ERROR
Package required but not available: 'OpenMx'
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Flavor: r-oldrel-windows-x86_64