Last updated on 2025-11-04 11:52:28 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.5 | 12.61 | 159.50 | 172.11 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.0.5 | 9.13 | 108.22 | 117.35 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.0.5 | 64.00 | 223.89 | 287.89 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 1.0.5 | 31.00 | 252.19 | 283.19 | ERROR | |
| r-devel-windows-x86_64 | 1.0.5 | 19.00 | 173.00 | 192.00 | ERROR | |
| r-patched-linux-x86_64 | 1.0.5 | 0.32 | 1.96 | 2.28 | ERROR | |
| r-release-linux-x86_64 | 1.0.5 | 13.27 | 157.39 | 170.66 | ERROR | |
| r-release-macos-arm64 | 1.0.5 | 6.00 | 118.00 | 124.00 | OK | |
| r-release-macos-x86_64 | 1.0.5 | 10.00 | 195.00 | 205.00 | OK | |
| r-release-windows-x86_64 | 1.0.5 | 19.00 | 171.00 | 190.00 | ERROR | |
| r-oldrel-macos-arm64 | 1.0.5 | 7.00 | 115.00 | 122.00 | NOTE | |
| r-oldrel-macos-x86_64 | 1.0.5 | 9.00 | 155.00 | 164.00 | NOTE | |
| r-oldrel-windows-x86_64 | 1.0.5 | 23.00 | 241.00 | 264.00 | ERROR |
Version: 1.0.5
Check: DESCRIPTION meta-information
Result: NOTE
Author field differs from that derived from Authors@R
Author: ‘Davis Weaver [aut, cre] (0000-0003-3086-497X)’
Authors@R: ‘Davis Weaver [aut, cre] (orcid: 0000-0003-3086-497X)’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.0.5
Check: tests
Result: ERROR
Running ‘testthat.R’ [49s/61s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(crosstalkr)
>
> test_check("crosstalkr")
[ FAIL 1 | WARN 7 | SKIP 12 | PASS 80 ]
══ Skipped tests (12) ══════════════════════════════════════════════════════════
• On CRAN (6): 'test-filter.R:33:3', 'test-ppi_ingest.R:18:3',
'test-ppi_ingest.R:26:3', 'test-ppi_ingest.R:32:3', 'test-utils.R:11:3',
'test-utils.R:17:3'
• relies on installed data (2): 'test-utils.R:52:3', 'test-utils.R:59:3'
• relies on system file (2): 'test-calc_np.R:1:1',
'test-node_suppression.R:1:1'
• skipping due to long download times (2): 'test-ppi_ingest.R:3:3',
'test-ppi_ingest.R:9:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-ppi_ingest.R:41:3'): to_taxon_id works for a variety of species ──
Error in `open.connection(structure(4L, class = c("curl", "connection"), conn_id = <pointer: 0x56495dbe5580>),
"rb")`: cannot open the connection
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-ppi_ingest.R:41:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─crosstalkr::to_taxon_id("pseudomonas aeruginosa")
5. │ └─crosstalkr::supported_species()
6. │ └─readr::read_tsv(file = "https://stringdb-static.org/download/species.v11.5.txt")
7. │ └─vroom::vroom(...)
8. │ └─vroom:::vroom_(...)
9. ├─base (local) `<fn>`(`<curl>`, "rb")
10. └─base::open.connection(`<curl>`, "rb")
[ FAIL 1 | WARN 7 | SKIP 12 | PASS 80 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.0.5
Check: tests
Result: ERROR
Running ‘testthat.R’ [29s/32s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(crosstalkr)
>
> test_check("crosstalkr")
[ FAIL 1 | WARN 7 | SKIP 12 | PASS 80 ]
══ Skipped tests (12) ══════════════════════════════════════════════════════════
• On CRAN (6): 'test-filter.R:33:3', 'test-ppi_ingest.R:18:3',
'test-ppi_ingest.R:26:3', 'test-ppi_ingest.R:32:3', 'test-utils.R:11:3',
'test-utils.R:17:3'
• relies on installed data (2): 'test-utils.R:52:3', 'test-utils.R:59:3'
• relies on system file (2): 'test-calc_np.R:1:1',
'test-node_suppression.R:1:1'
• skipping due to long download times (2): 'test-ppi_ingest.R:3:3',
'test-ppi_ingest.R:9:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-ppi_ingest.R:41:3'): to_taxon_id works for a variety of species ──
Error in `open.connection(structure(4L, class = c("curl", "connection"), conn_id = <pointer: 0x55bf41b0b310>),
"rb")`: cannot open the connection
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-ppi_ingest.R:41:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─crosstalkr::to_taxon_id("pseudomonas aeruginosa")
5. │ └─crosstalkr::supported_species()
6. │ └─readr::read_tsv(file = "https://stringdb-static.org/download/species.v11.5.txt")
7. │ └─vroom::vroom(...)
8. │ └─vroom:::vroom_(...)
9. ├─base (local) `<fn>`(`<curl>`, "rb")
10. └─base::open.connection(`<curl>`, "rb")
[ FAIL 1 | WARN 7 | SKIP 12 | PASS 80 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.5
Check: tests
Result: ERROR
Running ‘testthat.R’ [77s/180s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(crosstalkr)
>
> test_check("crosstalkr")
[ FAIL 1 | WARN 7 | SKIP 12 | PASS 80 ]
══ Skipped tests (12) ══════════════════════════════════════════════════════════
• On CRAN (6): 'test-filter.R:33:3', 'test-ppi_ingest.R:18:3',
'test-ppi_ingest.R:26:3', 'test-ppi_ingest.R:32:3', 'test-utils.R:11:3',
'test-utils.R:17:3'
• relies on installed data (2): 'test-utils.R:52:3', 'test-utils.R:59:3'
• relies on system file (2): 'test-calc_np.R:1:1',
'test-node_suppression.R:1:1'
• skipping due to long download times (2): 'test-ppi_ingest.R:3:3',
'test-ppi_ingest.R:9:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-ppi_ingest.R:41:3'): to_taxon_id works for a variety of species ──
Error in `open.connection(structure(4L, class = c("curl", "connection"), conn_id = <pointer: 0x559aee1b4bc0>),
"rb")`: cannot open the connection
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-ppi_ingest.R:41:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─crosstalkr::to_taxon_id("pseudomonas aeruginosa")
5. │ └─crosstalkr::supported_species()
6. │ └─readr::read_tsv(file = "https://stringdb-static.org/download/species.v11.5.txt")
7. │ └─vroom::vroom(...)
8. │ └─vroom:::vroom_(...)
9. ├─base (local) `<fn>`(`<curl>`, "rb")
10. └─base::open.connection(`<curl>`, "rb")
[ FAIL 1 | WARN 7 | SKIP 12 | PASS 80 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.0.5
Check: tests
Result: ERROR
Running ‘testthat.R’ [75s/91s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(crosstalkr)
>
> test_check("crosstalkr")
[ FAIL 1 | WARN 7 | SKIP 12 | PASS 80 ]
══ Skipped tests (12) ══════════════════════════════════════════════════════════
• On CRAN (6): 'test-filter.R:33:3', 'test-ppi_ingest.R:18:3',
'test-ppi_ingest.R:26:3', 'test-ppi_ingest.R:32:3', 'test-utils.R:11:3',
'test-utils.R:17:3'
• relies on installed data (2): 'test-utils.R:52:3', 'test-utils.R:59:3'
• relies on system file (2): 'test-calc_np.R:1:1',
'test-node_suppression.R:1:1'
• skipping due to long download times (2): 'test-ppi_ingest.R:3:3',
'test-ppi_ingest.R:9:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-ppi_ingest.R:41:3'): to_taxon_id works for a variety of species ──
Error in `open.connection(structure(4L, class = c("curl", "connection"), conn_id = <pointer: 0x3eec79b0>),
"rb")`: cannot open the connection
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-ppi_ingest.R:41:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─crosstalkr::to_taxon_id("pseudomonas aeruginosa")
5. │ └─crosstalkr::supported_species()
6. │ └─readr::read_tsv(file = "https://stringdb-static.org/download/species.v11.5.txt")
7. │ └─vroom::vroom(...)
8. │ └─vroom:::vroom_(...)
9. ├─base (local) `<fn>`(`<curl>`, "rb")
10. └─base::open.connection(`<curl>`, "rb")
[ FAIL 1 | WARN 7 | SKIP 12 | PASS 80 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.0.5
Check: tests
Result: ERROR
Running 'testthat.R' [38s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(crosstalkr)
>
> test_check("crosstalkr")
[ FAIL 1 | WARN 7 | SKIP 12 | PASS 80 ]
══ Skipped tests (12) ══════════════════════════════════════════════════════════
• On CRAN (6): 'test-filter.R:33:3', 'test-ppi_ingest.R:18:3',
'test-ppi_ingest.R:26:3', 'test-ppi_ingest.R:32:3', 'test-utils.R:11:3',
'test-utils.R:17:3'
• relies on installed data (2): 'test-utils.R:52:3', 'test-utils.R:59:3'
• relies on system file (2): 'test-calc_np.R:1:1',
'test-node_suppression.R:1:1'
• skipping due to long download times (2): 'test-ppi_ingest.R:3:3',
'test-ppi_ingest.R:9:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-ppi_ingest.R:41:3'): to_taxon_id works for a variety of species ──
Error in `open.connection(structure(4L, class = c("curl", "connection"), conn_id = <pointer: 0x000002381d9ee340>),
"rb")`: cannot open the connection
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-ppi_ingest.R:41:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─crosstalkr::to_taxon_id("pseudomonas aeruginosa")
5. │ └─crosstalkr::supported_species()
6. │ └─readr::read_tsv(file = "https://stringdb-static.org/download/species.v11.5.txt")
7. │ └─vroom::vroom(...)
8. │ └─vroom:::vroom_(...)
9. ├─base (local) `<fn>`(`<curl>`, "rb")
10. └─base::open.connection(`<curl>`, "rb")
[ FAIL 1 | WARN 7 | SKIP 12 | PASS 80 ]
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64
Version: 1.0.5
Check: package dependencies
Result: ERROR
Package required but not available: ‘ensembldb’
Package suggested but not available for checking: ‘EnsDb.Hsapiens.v86’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-patched-linux-x86_64
Version: 1.0.5
Check: tests
Result: ERROR
Running ‘testthat.R’ [50s/64s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(crosstalkr)
>
> test_check("crosstalkr")
[ FAIL 1 | WARN 7 | SKIP 12 | PASS 80 ]
══ Skipped tests (12) ══════════════════════════════════════════════════════════
• On CRAN (6): 'test-filter.R:33:3', 'test-ppi_ingest.R:18:3',
'test-ppi_ingest.R:26:3', 'test-ppi_ingest.R:32:3', 'test-utils.R:11:3',
'test-utils.R:17:3'
• relies on installed data (2): 'test-utils.R:52:3', 'test-utils.R:59:3'
• relies on system file (2): 'test-calc_np.R:1:1',
'test-node_suppression.R:1:1'
• skipping due to long download times (2): 'test-ppi_ingest.R:3:3',
'test-ppi_ingest.R:9:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-ppi_ingest.R:41:3'): to_taxon_id works for a variety of species ──
Error in `open.connection(structure(4L, class = c("curl", "connection"), conn_id = <pointer: 0x555c3d49c5d0>),
"rb")`: cannot open the connection
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-ppi_ingest.R:41:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─crosstalkr::to_taxon_id("pseudomonas aeruginosa")
5. │ └─crosstalkr::supported_species()
6. │ └─readr::read_tsv(file = "https://stringdb-static.org/download/species.v11.5.txt")
7. │ └─vroom::vroom(...)
8. │ └─vroom:::vroom_(...)
9. ├─base (local) `<fn>`(`<curl>`, "rb")
10. └─base::open.connection(`<curl>`, "rb")
[ FAIL 1 | WARN 7 | SKIP 12 | PASS 80 ]
Error: Test failures
Execution halted
Flavor: r-release-linux-x86_64
Version: 1.0.5
Check: tests
Result: ERROR
Running 'testthat.R' [38s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(crosstalkr)
>
> test_check("crosstalkr")
[ FAIL 1 | WARN 7 | SKIP 12 | PASS 80 ]
══ Skipped tests (12) ══════════════════════════════════════════════════════════
• On CRAN (6): 'test-filter.R:33:3', 'test-ppi_ingest.R:18:3',
'test-ppi_ingest.R:26:3', 'test-ppi_ingest.R:32:3', 'test-utils.R:11:3',
'test-utils.R:17:3'
• relies on installed data (2): 'test-utils.R:52:3', 'test-utils.R:59:3'
• relies on system file (2): 'test-calc_np.R:1:1',
'test-node_suppression.R:1:1'
• skipping due to long download times (2): 'test-ppi_ingest.R:3:3',
'test-ppi_ingest.R:9:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-ppi_ingest.R:41:3'): to_taxon_id works for a variety of species ──
Error in `open.connection(structure(4L, class = c("curl", "connection"), conn_id = <pointer: 0x0000025884df4d60>),
"rb")`: cannot open the connection
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-ppi_ingest.R:41:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─crosstalkr::to_taxon_id("pseudomonas aeruginosa")
5. │ └─crosstalkr::supported_species()
6. │ └─readr::read_tsv(file = "https://stringdb-static.org/download/species.v11.5.txt")
7. │ └─vroom::vroom(...)
8. │ └─vroom:::vroom_(...)
9. ├─base (local) `<fn>`(`<curl>`, "rb")
10. └─base::open.connection(`<curl>`, "rb")
[ FAIL 1 | WARN 7 | SKIP 12 | PASS 80 ]
Error: Test failures
Execution halted
Flavor: r-release-windows-x86_64
Version: 1.0.5
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘EnsDb.Hsapiens.v86’
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 1.0.5
Check: tests
Result: ERROR
Running 'testthat.R' [63s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(crosstalkr)
>
> test_check("crosstalkr")
[ FAIL 1 | WARN 7 | SKIP 12 | PASS 80 ]
══ Skipped tests (12) ══════════════════════════════════════════════════════════
• On CRAN (6): 'test-filter.R:33:3', 'test-ppi_ingest.R:18:3',
'test-ppi_ingest.R:26:3', 'test-ppi_ingest.R:32:3', 'test-utils.R:11:3',
'test-utils.R:17:3'
• relies on installed data (2): 'test-utils.R:52:3', 'test-utils.R:59:3'
• relies on system file (2): 'test-calc_np.R:1:1',
'test-node_suppression.R:1:1'
• skipping due to long download times (2): 'test-ppi_ingest.R:3:3',
'test-ppi_ingest.R:9:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-ppi_ingest.R:41:3'): to_taxon_id works for a variety of species ──
Error in `open.connection(structure(4L, class = c("curl", "connection"), conn_id = <pointer: 0x0000020b9e3fa5a0>),
"rb")`: cannot open the connection
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-ppi_ingest.R:41:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─crosstalkr::to_taxon_id("pseudomonas aeruginosa")
5. │ └─crosstalkr::supported_species()
6. │ └─readr::read_tsv(file = "https://stringdb-static.org/download/species.v11.5.txt")
7. │ └─vroom::vroom(...)
8. │ └─vroom:::vroom_(...)
9. ├─base (local) `<fn>`(`<curl>`, "rb")
10. └─base::open.connection(`<curl>`, "rb")
[ FAIL 1 | WARN 7 | SKIP 12 | PASS 80 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-x86_64