Last updated on 2026-10-24 00:52:12 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.2.0 | 1.49 | 44.53 | 46.02 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.2.0 | 1.44 | 25.96 | 27.40 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.2.0 | 30.47 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.2.0 | 33.74 | OK | |||
| r-devel-windows-x86_64 | 0.2.0 | 4.00 | 66.00 | 70.00 | OK | |
| r-patched-linux-x86_64 | 0.2.0 | 2.02 | 38.95 | 40.97 | OK | |
| r-release-linux-x86_64 | 0.2.0 | 1.93 | 39.97 | 41.90 | OK | |
| r-release-macos-arm64 | 0.2.0 | 1.00 | 15.00 | 16.00 | OK | |
| r-release-macos-x86_64 | 0.2.0 | 2.00 | 45.00 | 47.00 | OK | |
| r-release-windows-x86_64 | 0.2.0 | 5.00 | 60.00 | 65.00 | OK | |
| r-oldrel-macos-arm64 | 0.2.0 | OK | ||||
| r-oldrel-macos-x86_64 | 0.2.0 | 2.00 | 54.00 | 56.00 | OK | |
| r-oldrel-windows-x86_64 | 0.2.0 | 6.00 | 69.00 | 75.00 | OK |
Version: 0.2.0
Check: examples
Result: ERROR
Running examples in ‘cforward-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: cforward
> ### Title: Forward Selection Based on C-Index/Concordance
> ### Aliases: cforward cforward_one make_folds
>
> ### ** Examples
>
> variables = c("gender",
+ "age_years_interview", "education_adult")
>
> res = cforward(nhanes_example,
+ event_time = "event_time_years",
+ event_status = "mortstat",
+ weight_column = "WTMEC4YR_norm",
+ variables = variables,
+ included_variables = NULL,
+ n_folds = 5,
+ c_threshold = 0.02,
+ seed = 1989,
+ max_model_size = 50,
+ verbose = TRUE)
Creating 5 Folds
# A tibble: 5 × 2
fold_number n
<int> <int>
1 1 731
2 2 730
3 3 731
4 4 729
5 5 732
Error in a$specials[[i]] : subscript out of bounds
Calls: cforward ... estimate_concordance -> predict -> predict.coxph -> delete.response -> off
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.2.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [3s/3s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(cforward)
>
> test_check("cforward")
# A tibble: 5 × 2
fold_number n
<int> <int>
1 1 731
2 2 730
3 3 731
4 4 729
5 5 732
Saving _problems/test-nhanes-15.R
# A tibble: 10 × 2
fold_number n
<int> <int>
1 1 367
2 2 367
3 3 363
4 4 365
5 5 364
6 6 366
7 7 365
8 8 365
9 9 365
10 10 366
# A tibble: 10 × 2
fold_number n
<int> <int>
1 1 367
2 2 367
3 3 363
4 4 365
5 5 364
6 6 366
7 7 365
8 8 365
9 9 365
10 10 366
Saving _problems/test-nhanes-95.R
# A tibble: 5 × 2
fold_number n
<int> <int>
1 1 731
2 2 730
3 3 731
4 4 729
5 5 732
Saving _problems/test-nhanes-126.R
# A tibble: 5 × 2
fold_number n
<int> <int>
1 1 731
2 2 730
3 3 731
4 4 729
5 5 732
Saving _problems/test-nhanes-146.R
Saving _problems/test-wrong_arguments-15.R
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 1 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-nhanes.R:6:3'): Example for cforward ───────────────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─cforward::cforward(...) at test-nhanes.R:6:3
2. └─cforward::cforward_one(...)
3. └─cforward::estimate_concordance(...)
4. ├─stats::predict(fit_k, type = "lp", newdata = test)
5. └─survival:::predict.coxph(fit_k, type = "lp", newdata = test)
6. └─stats::delete.response(Terms)
7. └─stats (local) off(a$specials[[i]])
── Error ('test-nhanes.R:86:7'): Variables and included have overlap ───────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test-nhanes.R:84:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. ├─testthat::expect_message(...) at test-nhanes.R:85:5
7. │ └─testthat:::quasi_capture(enquo(object), label, capture_messages)
8. │ ├─testthat (local) .capture(...)
9. │ │ └─base::withCallingHandlers(...)
10. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
11. └─cforward::cforward(...) at test-nhanes.R:86:7
12. └─cforward::cforward_one(...)
13. └─cforward::estimate_concordance(...)
14. ├─stats::predict(fit_k, type = "lp", newdata = test)
15. └─survival:::predict.coxph(fit_k, type = "lp", newdata = test)
16. └─stats::delete.response(Terms)
17. └─stats (local) off(a$specials[[i]])
── Error ('test-nhanes.R:117:3'): Restrict maximum size ────────────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─cforward::cforward(...) at test-nhanes.R:117:3
2. └─cforward::cforward_one(...)
3. └─cforward::estimate_concordance(...)
4. ├─stats::predict(fit_k, type = "lp", newdata = test)
5. └─survival:::predict.coxph(fit_k, type = "lp", newdata = test)
6. └─stats::delete.response(Terms)
7. └─stats (local) off(a$specials[[i]])
── Error ('test-nhanes.R:135:3'): Restrict c_threshold ─────────────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─cforward::cforward(...) at test-nhanes.R:135:3
2. └─cforward::cforward_one(...)
3. └─cforward::estimate_concordance(...)
4. ├─stats::predict(fit_k, type = "lp", newdata = test)
5. └─survival:::predict.coxph(fit_k, type = "lp", newdata = test)
6. └─stats::delete.response(Terms)
7. └─stats (local) off(a$specials[[i]])
── Error ('test-wrong_arguments.R:6:3'): Passing in weights and data arguments ──
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─cforward::cforward(...) at test-wrong_arguments.R:6:3
2. └─cforward::cforward_one(...)
3. └─cforward::estimate_concordance(...)
4. ├─stats::predict(fit_k, type = "lp", newdata = test)
5. └─survival:::predict.coxph(fit_k, type = "lp", newdata = test)
6. └─stats::delete.response(Terms)
7. └─stats (local) off(a$specials[[i]])
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 1 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc