Last updated on 2024-05-28 12:56:45 CEST.
| Package | ERROR | WARN | NOTE | OK |
|---|---|---|---|---|
| DtD | 1 | 11 | ||
| mdgc | 11 | 1 | ||
| mmcif | 3 | 9 | ||
| parglm | 12 | |||
| pedmod | 12 | |||
| psqn | 12 | |||
| SimSurvNMarker | 12 | |||
| VAJointSurv | 1 | 3 | 8 |
Current CRAN status: WARN: 1, NOTE: 11
Version: 0.2.2
Check: C++ specification
Result: NOTE
Specified C++11: please drop specification unless essential
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.2.2
Check: LazyData
Result: NOTE
'LazyData' is specified without a 'data' directory
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.2.2
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘Distance-to-default.Rnw’ using knitr
Error: processing vignette 'Distance-to-default.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'Distance-to-default.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.111 \hlkwd{library}\hldef
{(DtD)}
?
! Emergency stop.
! Emergency stop.
l.111
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘Distance-to-default.Rnw’
SUMMARY: processing the following file failed:
‘Distance-to-default.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Current CRAN status: NOTE: 11, OK: 1
Version: 0.1.7
Check: Rd files
Result: NOTE
checkRd: (-1) get_mdgc.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get_mdgc.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get_mdgc.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get_mdgc.Rd:37: Lost braces in \itemize; meant \describe ?
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64
Version: 0.1.7
Check: installed package size
Result: NOTE
installed size is 10.7Mb
sub-directories of 1Mb or more:
libs 10.3Mb
Flavors: r-release-macos-arm64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: NOTE: 3, OK: 9
Version: 0.1.1
Check: installed package size
Result: NOTE
installed size is 16.8Mb
sub-directories of 1Mb or more:
doc 1.3Mb
libs 15.0Mb
Flavors: r-release-macos-arm64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: NOTE: 12
Version: 0.1.7
Check: C++ specification
Result: NOTE
Specified C++11: please drop specification unless essential
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: NOTE: 12
Version: 0.2.4
Check: Rd files
Result: NOTE
checkRd: (-1) pedigree_ll_terms.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pedigree_ll_terms.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pedigree_ll_terms.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pedigree_ll_terms.Rd:19-20: Lost braces in \itemize; meant \describe ?
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64
Version: 0.2.4
Check: installed package size
Result: NOTE
installed size is 5.9Mb
sub-directories of 1Mb or more:
doc 4.0Mb
libs 1.7Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-arm64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: NOTE: 12
Version: 0.3.1
Check: C++ specification
Result: NOTE
Specified C++11: please drop specification unless essential
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.3.1
Check: installed package size
Result: NOTE
installed size is 11.1Mb
sub-directories of 1Mb or more:
libs 10.4Mb
Flavors: r-release-macos-arm64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: NOTE: 12
Version: 0.1.3
Check: C++ specification
Result: NOTE
Specified C++14: please drop specification unless essential
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: ERROR: 1, NOTE: 3, OK: 8
Version: 0.1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [3s/5s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(VAJointSurv)
Loading required package: survival
>
> options(testthat.progress.max_fails = 1000)
> test_check("VAJointSurv")
*** caught segfault ***
address 0x1, cause 'memory not mapped'
Traceback:
1: eval_expansion(ptr, x, weights, der, lower_limit)
2: obj_cpp$eval(out_x)
3: eval(code, test_env)
4: eval(code, test_env)
5: withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error)
6: doTryCatch(return(expr), name, parentenv, handler)
7: tryCatchOne(expr, names, parentenv, handlers[[1L]])
8: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
9: doTryCatch(return(expr), name, parentenv, handler)
10: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), names[nh], parentenv, handlers[[nh]])
11: tryCatchList(expr, classes, parentenv, handlers)
12: tryCatch(withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error), error = handle_fatal, skip = function(e) { })
13: test_code(desc, code, env = parent.frame(), default_reporter = local_interactive_reporter())
14: test_that("The C++ version of poly gives the right result", { in_x <- 2:5 obj_truth <- poly(in_x, degree = 3) out_x <- 1:6 truth <- predict(obj_truth, out_x) obj_cpp <- poly_term(in_x, degree = 3) expect_s3_class(obj_cpp, "poly_term") expect_equal(obj_cpp$time, in_x) expansion <- obj_cpp$eval(out_x) expect_equal(expansion, t(truth), ignore_attr = TRUE) obj_cpp <- poly_term(in_x, degree = 3, intercept = TRUE) expect_s3_class(obj_cpp, "poly_term") expect_equal(obj_cpp$time, in_x) expansion <- obj_cpp$eval(out_x) expect_equal(expansion, rbind(1, t(truth)), ignore_attr = TRUE) obj_cpp <- poly_term(in_x, degree = 3, raw = TRUE) expect_s3_class(obj_cpp, "poly_term") expect_equal(obj_cpp$time, in_x) expansion <- obj_cpp$eval(out_x) expect_equal(expansion, t(outer(out_x, 1:3, `^`))) obj_cpp <- poly_term(in_x, degree = 3, raw = TRUE, intercept = TRUE) expect_s3_class(obj_cpp, "poly_term") expect_equal(obj_cpp$time, in_x) expansion <- obj_cpp$eval(out_x) expect_equal(expansion, t(outer(out_x, 0:3, `^`))) obj_cpp <- poly_term(in_x, degree = 0) expect_s3_class(obj_cpp, "poly_term") expect_equal(obj_cpp$time, in_x) expansion <- obj_cpp$eval(out_x) expect_equal(expansion, matrix(0, 0, length(out_x))) obj_cpp <- poly_term(in_x, degree = 0, intercept = TRUE) expect_s3_class(obj_cpp, "poly_term") expect_equal(obj_cpp$time, in_x) expansion <- obj_cpp$eval(out_x) expect_equal(expansion, matrix(1, 1, length(out_x)))})
15: eval(code, test_env)
16: eval(code, test_env)
17: withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error)
18: doTryCatch(return(expr), name, parentenv, handler)
19: tryCatchOne(expr, names, parentenv, handlers[[1L]])
20: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
21: doTryCatch(return(expr), name, parentenv, handler)
22: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), names[nh], parentenv, handlers[[nh]])
23: tryCatchList(expr, classes, parentenv, handlers)
24: tryCatch(withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error), error = handle_fatal, skip = function(e) { })
25: test_code(test = NULL, code = exprs, env = env, default_reporter = StopReporter$new())
26: source_file(path, env = env(env), desc = desc, error_call = error_call)
27: FUN(X[[i]], ...)
28: lapply(test_paths, test_one_file, env = env, desc = desc, error_call = error_call)
29: doTryCatch(return(expr), name, parentenv, handler)
30: tryCatchOne(expr, names, parentenv, handlers[[1L]])
31: tryCatchList(expr, classes, parentenv, handlers)
32: tryCatch(code, testthat_abort_reporter = function(cnd) { cat(conditionMessage(cnd), "\n") NULL})
33: with_reporter(reporters$multi, lapply(test_paths, test_one_file, env = env, desc = desc, error_call = error_call))
34: test_files_serial(test_dir = test_dir, test_package = test_package, test_paths = test_paths, load_helpers = load_helpers, reporter = reporter, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, desc = desc, load_package = load_package, error_call = error_call)
35: test_files(test_dir = path, test_paths = test_paths, test_package = package, reporter = reporter, load_helpers = load_helpers, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, load_package = load_package, parallel = parallel)
36: test_dir("testthat", package = package, reporter = reporter, ..., load_package = "installed")
37: test_check("VAJointSurv")
An irrecoverable exception occurred. R is aborting now ...
Segmentation fault
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.1.0
Check: installed package size
Result: NOTE
installed size is 23.9Mb
sub-directories of 1Mb or more:
doc 2.2Mb
libs 21.5Mb
Flavors: r-release-macos-arm64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64