Last updated on 2025-12-20 17:50:20 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.3.0 | 4.79 | 40.70 | 45.49 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.3.0 | 3.59 | 29.89 | 33.48 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.3.0 | 9.00 | 59.66 | 68.66 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 0.3.0 | 62.66 | ERROR | |||
| r-devel-windows-x86_64 | 0.3.0 | 7.00 | 57.00 | 64.00 | OK | |
| r-patched-linux-x86_64 | 0.3.0 | 4.27 | 39.30 | 43.57 | OK | |
| r-release-linux-x86_64 | 0.3.0 | 4.89 | 38.78 | 43.67 | OK | |
| r-release-macos-arm64 | 0.3.0 | OK | ||||
| r-release-macos-x86_64 | 0.3.0 | 3.00 | 39.00 | 42.00 | OK | |
| r-release-windows-x86_64 | 0.3.0 | 9.00 | 55.00 | 64.00 | OK | |
| r-oldrel-macos-arm64 | 0.3.0 | OK | ||||
| r-oldrel-macos-x86_64 | 0.3.0 | 3.00 | 33.00 | 36.00 | OK | |
| r-oldrel-windows-x86_64 | 0.3.0 | 9.00 | 66.00 | 75.00 | OK |
Version: 0.3.0
Check: examples
Result: ERROR
Running examples in ‘akiFlagger-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: returnAKIpatients
> ### Title: Flag patients for AKI
> ### Aliases: returnAKIpatients
>
> ### ** Examples
>
> returnAKIpatients(toy)
Error in `[.data.table`(df, , `:=`(min_creat48, sapply(.SD[, time], function(x) min(creatinine[between(.SD[, :
attempt access index 4/4 in VECTOR_ELT
Calls: returnAKIpatients -> [ -> [.data.table
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.3.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [2s/3s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(akiFlagger)
>
> test_check("akiFlagger")
Saving _problems/test-returnAKIpatients-24.R
Saving _problems/test-returnAKIpatients-45.R
Saving _problems/test-returnAKIpatients-71.R
Saving _problems/test-returnAKIpatients-96.R
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 2 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-returnAKIpatients.R:24:3'): Patient A - rolling minimum ────────
Error in ``[.data.table`(df, , `:=`(min_creat48, sapply(.SD[, time], function(x) min(creatinine[between(.SD[, time], x - window1, x)]))), by = patient_id)`: attempt access index 4/4 in VECTOR_ELT
Backtrace:
▆
1. └─akiFlagger::returnAKIpatients(df) at test-returnAKIpatients.R:24:3
2. ├─...[]
3. └─data.table:::`[.data.table`(...)
── Error ('test-returnAKIpatients.R:45:3'): Patient A - historical baseline ────
Error in ``[.data.table`(df, , `:=`(min_creat48, sapply(.SD[, time], function(x) min(creatinine[between(.SD[, time], x - window1, x)]))), by = patient_id)`: attempt access index 4/4 in VECTOR_ELT
Backtrace:
▆
1. └─akiFlagger::returnAKIpatients(df, HB_trumping = T) at test-returnAKIpatients.R:45:3
2. ├─...[]
3. └─data.table:::`[.data.table`(...)
── Error ('test-returnAKIpatients.R:71:3'): Patient B - rolling minimum ────────
Error in ``[.data.table`(df, , `:=`(min_creat48, sapply(.SD[, time], function(x) min(creatinine[between(.SD[, time], x - window1, x)]))), by = patient_id)`: attempt access index 4/4 in VECTOR_ELT
Backtrace:
▆
1. └─akiFlagger::returnAKIpatients(df, HB_trumping = F) at test-returnAKIpatients.R:71:3
2. ├─...[]
3. └─data.table:::`[.data.table`(...)
── Error ('test-returnAKIpatients.R:96:3'): Patient B - historical baseline ────
Error in ``[.data.table`(df, , `:=`(min_creat48, sapply(.SD[, time], function(x) min(creatinine[between(.SD[, time], x - window1, x)]))), by = patient_id)`: attempt access index 4/4 in VECTOR_ELT
Backtrace:
▆
1. └─akiFlagger::returnAKIpatients(df, HB_trumping = T) at test-returnAKIpatients.R:96:3
2. ├─...[]
3. └─data.table:::`[.data.table`(...)
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 2 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.3.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [1s/2s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(akiFlagger)
>
> test_check("akiFlagger")
Saving _problems/test-returnAKIpatients-24.R
Saving _problems/test-returnAKIpatients-45.R
Saving _problems/test-returnAKIpatients-71.R
Saving _problems/test-returnAKIpatients-96.R
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 2 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-returnAKIpatients.R:24:3'): Patient A - rolling minimum ────────
Error in ``[.data.table`(df, , `:=`(min_creat48, sapply(.SD[, time], function(x) min(creatinine[between(.SD[, time], x - window1, x)]))), by = patient_id)`: attempt access index 4/4 in VECTOR_ELT
Backtrace:
▆
1. └─akiFlagger::returnAKIpatients(df) at test-returnAKIpatients.R:24:3
2. ├─...[]
3. └─data.table:::`[.data.table`(...)
── Error ('test-returnAKIpatients.R:45:3'): Patient A - historical baseline ────
Error in ``[.data.table`(df, , `:=`(min_creat48, sapply(.SD[, time], function(x) min(creatinine[between(.SD[, time], x - window1, x)]))), by = patient_id)`: attempt access index 4/4 in VECTOR_ELT
Backtrace:
▆
1. └─akiFlagger::returnAKIpatients(df, HB_trumping = T) at test-returnAKIpatients.R:45:3
2. ├─...[]
3. └─data.table:::`[.data.table`(...)
── Error ('test-returnAKIpatients.R:71:3'): Patient B - rolling minimum ────────
Error in ``[.data.table`(df, , `:=`(min_creat48, sapply(.SD[, time], function(x) min(creatinine[between(.SD[, time], x - window1, x)]))), by = patient_id)`: attempt access index 4/4 in VECTOR_ELT
Backtrace:
▆
1. └─akiFlagger::returnAKIpatients(df, HB_trumping = F) at test-returnAKIpatients.R:71:3
2. ├─...[]
3. └─data.table:::`[.data.table`(...)
── Error ('test-returnAKIpatients.R:96:3'): Patient B - historical baseline ────
Error in ``[.data.table`(df, , `:=`(min_creat48, sapply(.SD[, time], function(x) min(creatinine[between(.SD[, time], x - window1, x)]))), by = patient_id)`: attempt access index 4/4 in VECTOR_ELT
Backtrace:
▆
1. └─akiFlagger::returnAKIpatients(df, HB_trumping = T) at test-returnAKIpatients.R:96:3
2. ├─...[]
3. └─data.table:::`[.data.table`(...)
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 2 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.3.0
Check: examples
Result: ERROR
Running examples in ‘akiFlagger-Ex.R’ failed
The error most likely occurred in:
> ### Name: returnAKIpatients
> ### Title: Flag patients for AKI
> ### Aliases: returnAKIpatients
>
> ### ** Examples
>
> returnAKIpatients(toy)
Error in `[.data.table`(df, , `:=`(min_creat48, sapply(.SD[, time], function(x) min(creatinine[between(.SD[, :
attempt access index 4/4 in VECTOR_ELT
Calls: returnAKIpatients -> [ -> [.data.table
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.3.0
Check: tests
Result: ERROR
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(akiFlagger)
>
> test_check("akiFlagger")
Saving _problems/test-returnAKIpatients-24.R
Saving _problems/test-returnAKIpatients-45.R
Saving _problems/test-returnAKIpatients-71.R
Saving _problems/test-returnAKIpatients-96.R
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 2 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-returnAKIpatients.R:24:3'): Patient A - rolling minimum ────────
Error in ``[.data.table`(df, , `:=`(min_creat48, sapply(.SD[, time], function(x) min(creatinine[between(.SD[, time], x - window1, x)]))), by = patient_id)`: attempt access index 4/4 in VECTOR_ELT
Backtrace:
▆
1. └─akiFlagger::returnAKIpatients(df) at test-returnAKIpatients.R:24:3
2. ├─...[]
3. └─data.table:::`[.data.table`(...)
── Error ('test-returnAKIpatients.R:45:3'): Patient A - historical baseline ────
Error in ``[.data.table`(df, , `:=`(min_creat48, sapply(.SD[, time], function(x) min(creatinine[between(.SD[, time], x - window1, x)]))), by = patient_id)`: attempt access index 4/4 in VECTOR_ELT
Backtrace:
▆
1. └─akiFlagger::returnAKIpatients(df, HB_trumping = T) at test-returnAKIpatients.R:45:3
2. ├─...[]
3. └─data.table:::`[.data.table`(...)
── Error ('test-returnAKIpatients.R:71:3'): Patient B - rolling minimum ────────
Error in ``[.data.table`(df, , `:=`(min_creat48, sapply(.SD[, time], function(x) min(creatinine[between(.SD[, time], x - window1, x)]))), by = patient_id)`: attempt access index 4/4 in VECTOR_ELT
Backtrace:
▆
1. └─akiFlagger::returnAKIpatients(df, HB_trumping = F) at test-returnAKIpatients.R:71:3
2. ├─...[]
3. └─data.table:::`[.data.table`(...)
── Error ('test-returnAKIpatients.R:96:3'): Patient B - historical baseline ────
Error in ``[.data.table`(df, , `:=`(min_creat48, sapply(.SD[, time], function(x) min(creatinine[between(.SD[, time], x - window1, x)]))), by = patient_id)`: attempt access index 4/4 in VECTOR_ELT
Backtrace:
▆
1. └─akiFlagger::returnAKIpatients(df, HB_trumping = T) at test-returnAKIpatients.R:96:3
2. ├─...[]
3. └─data.table:::`[.data.table`(...)
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 2 ]
Error:
! Test failures.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc