Last updated on 2026-08-19 00:57:11 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.3 | 2.26 | 167.12 | 169.38 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.0.3 | 1.66 | 137.70 | 139.36 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.0.3 | 133.40 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.3 | 131.53 | NOTE | |||
| r-devel-windows-x86_64 | 1.0.3 | 4.00 | 366.00 | 370.00 | NOTE | |
| r-patched-linux-x86_64 | 1.0.3 | 2.35 | 159.23 | 161.58 | OK | |
| r-release-linux-x86_64 | 1.0.3 | 2.11 | 181.18 | 183.29 | OK | |
| r-release-macos-arm64 | 1.0.3 | 1.00 | 64.00 | 65.00 | OK | |
| r-release-macos-x86_64 | 1.0.3 | 2.00 | 338.00 | 340.00 | OK | |
| r-release-windows-x86_64 | 1.0.3 | 4.00 | 0.00 | 4.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.3 | 1.00 | 53.00 | 54.00 | OK | |
| r-oldrel-macos-x86_64 | 1.0.3 | 2.00 | 256.00 | 258.00 | OK | |
| r-oldrel-windows-x86_64 | 1.0.3 | 5.00 | 107.00 | 112.00 | ERROR |
Version: 1.0.3
Check: R code for possible problems
Result: NOTE
Found calls to structure() using deprecated special names:
ZIBR/tests/testthat/test-simulations.R (.Dim: 2, .Dimnames: 2)
ZIBR/tests/testthat/test-zibr.R (.Dim: 6, .Dimnames: 6)
'.Dim' should be changed to 'dim'.
'.Dimnames' should be changed to 'dimnames'.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Version: 1.0.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'zibr.Rmd' using rmarkdown
Quitting from zibr.Rmd:109-121 [unnamed-chunk-8]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `file()`:
! cannot open the connection to 'https://raw.githubusercontent.com/chvlyl/PLEASE/master/1_Data/Raw_Data/MetaPhlAn/PLEASE/G_Remove_unclassfied_Renormalized_Merge_Rel_MetaPhlAn_Result.xls'
---
Backtrace:
▆
1. └─utils::read.table(...)
2. └─base::file(file, "rt")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'zibr.Rmd' failed with diagnostics:
cannot open the connection to 'https://raw.githubusercontent.com/chvlyl/PLEASE/master/1_Data/Raw_Data/MetaPhlAn/PLEASE/G_Remove_unclassfied_Renormalized_Merge_Rel_MetaPhlAn_Result.xls'
--- failed re-building 'zibr.Rmd'
SUMMARY: processing the following file failed:
'zibr.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-windows-x86_64