Last updated on 2026-07-26 12:50:32 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.7 | 44.21 | 529.78 | 573.99 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.7 | 30.90 | 375.40 | 406.30 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0.7 | 73.00 | 726.38 | 799.38 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.0.7 | 33.00 | 420.76 | 453.76 | NOTE | |
| r-devel-windows-x86_64 | 1.0.7 | 41.00 | 714.00 | 755.00 | OK | |
| r-patched-linux-x86_64 | 1.0.7 | 41.62 | 504.27 | 545.89 | OK | |
| r-release-linux-x86_64 | 1.0.7 | 41.64 | 500.62 | 542.26 | OK | |
| r-release-macos-arm64 | 1.0.7 | 12.00 | 1792.00 | 1804.00 | ERROR | |
| r-release-macos-x86_64 | 1.0.7 | 22.00 | 1781.00 | 1803.00 | FAIL | |
| r-release-windows-x86_64 | 1.0.7 | 43.00 | 759.00 | 802.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.7 | 10.00 | 790.00 | 800.00 | ERROR | |
| r-oldrel-macos-x86_64 | 1.0.7 | 28.00 | 1775.00 | 1803.00 | FAIL | |
| r-oldrel-windows-x86_64 | 1.0.7 | 50.00 | 791.00 | 841.00 | OK |
Version: 1.0.7
Check: for non-standard things in the check directory
Result: NOTE
Found the following files/directories:
‘BSgenome.Ecoli.NCBI.ASM584v2’ ‘BSgenomeForge’
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.0.7
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘genome_wide_tm_ecoli.Rmd’ using rmarkdown
Quitting from genome_wide_tm_ecoli.Rmd:87-132 [setup-ecoli-bsgenome]
Execution halted
* checking PDF version of manual ...* using check arguments '--no-clean-on-error '
Flavor: r-release-macos-arm64
Version: 1.0.7
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘genome_wide_tm_ecoli.Rmd’ using rmarkdown
Quitting from genome_wide_tm_ecoli.Rmd:87-132 [setup-ecoli-bsgenome]
Execution halted
Flavors: r-release-macos-x86_64, r-oldrel-macos-x86_64
Version: 1.0.7
Check: PDF version of manual
Result: FAIL
* DONE
* Status: FAILURE
* using check arguments '--no-clean-on-error '
* elapsed time (check, wall clock): 30:03
* result classification: failed check, errors:yes, warnings:no, notes:no
Flavors: r-release-macos-x86_64, r-oldrel-macos-x86_64
Version: 1.0.7
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘genome_wide_tm_ecoli.Rmd’ using rmarkdown
trying URL 'https://bioconductor.org/packages/3.22/bioc/bin/macosx/big-sur-arm64/contrib/4.5/BSgenomeForge_1.10.2.tgz'
Content type 'application/x-compressed-tar' length 832361 bytes (812 KB)
==================================================
downloaded 812 KB
trying URL 'https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/005/845/GCF_000005845.2_ASM584v2/GCF_000005845.2_ASM584v2_genomic.fna.gz'
Content type 'application/x-gzip' length 1379902 bytes (1.3 MB)
==================================================
downloaded 1.3 MB
2026-07-26 17:56:05.668 R[88384:130288] XType: Using static font registry.
Quitting from genome_wide_tm_ecoli.Rmd:296-302 [linear-full]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Package 'karyoploteR' is required for linear genome plots. Install it with: BiocManager::install("karyoploteR")
---
Backtrace:
▆
1. └─TmCalculator::plot_genome_track(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'genome_wide_tm_ecoli.Rmd' failed with diagnostics:
Package 'karyoploteR' is required for linear genome plots. Install it with: BiocManager::install("karyoploteR")
--- failed re-building ‘genome_wide_tm_ecoli.Rmd’
SUMMARY: processing the following file failed:
‘genome_wide_tm_ecoli.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-macos-arm64