Last updated on 2026-02-19 11:54:03 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.10.1 | 4.14 | 46.96 | 51.10 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.10.1 | 2.83 | 34.91 | 37.74 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.10.1 | 7.00 | 72.07 | 79.07 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.10.1 | 80.44 | ERROR | |||
| r-devel-macos-arm64 | 1.10.1 | 1.00 | 30.00 | 31.00 | OK | |
| r-devel-windows-x86_64 | 1.10.1 | 5.00 | 76.00 | 81.00 | OK | |
| r-patched-linux-x86_64 | 1.10.1 | OK | ||||
| r-release-linux-x86_64 | 1.10.1 | 3.67 | 43.00 | 46.67 | OK | |
| r-release-macos-arm64 | 1.10.1 | 1.00 | 29.00 | 30.00 | OK | |
| r-release-macos-x86_64 | 1.10.1 | 3.00 | 80.00 | 83.00 | OK | |
| r-release-windows-x86_64 | 1.10.1 | 7.00 | 72.00 | 79.00 | OK | |
| r-oldrel-macos-arm64 | 1.10.1 | 1.00 | 31.00 | 32.00 | OK | |
| r-oldrel-macos-x86_64 | 1.10.1 | 3.00 | 93.00 | 96.00 | OK | |
| r-oldrel-windows-x86_64 | 1.10.1 | 7.00 | 89.00 | 96.00 | OK |
Version: 1.10.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘getting_started_with_TCGAretriever.Rmd’ using rmarkdown
Quitting from getting_started_with_TCGAretriever.Rmd:43-57 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.frame`:
! undefined columns selected
---
Backtrace:
▆
1. ├─base::grepl("tcga_pub$", all_studies[, "studyId"])
2. │ └─base::is.factor(x)
3. ├─all_studies[, "studyId"]
4. └─base::`[.data.frame`(all_studies, , "studyId")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'getting_started_with_TCGAretriever.Rmd' failed with diagnostics:
undefined columns selected
--- failed re-building ‘getting_started_with_TCGAretriever.Rmd’
SUMMARY: processing the following file failed:
‘getting_started_with_TCGAretriever.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc