Last updated on 2025-12-19 17:49:57 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.4.0 | 6.75 | 86.51 | 93.26 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.4.0 | 4.85 | 60.77 | 65.62 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.4.0 | 12.00 | 124.39 | 136.39 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 1.4.0 | 11.00 | 131.58 | 142.58 | ERROR | |
| r-devel-windows-x86_64 | 1.4.0 | 10.00 | 116.00 | 126.00 | OK | |
| r-patched-linux-x86_64 | 1.4.0 | 6.69 | 79.74 | 86.43 | OK | |
| r-release-linux-x86_64 | 1.4.0 | 7.65 | 79.40 | 87.05 | OK | |
| r-release-macos-arm64 | 1.4.0 | OK | ||||
| r-release-macos-x86_64 | 1.4.0 | 5.00 | 85.00 | 90.00 | OK | |
| r-release-windows-x86_64 | 1.4.0 | 10.00 | 111.00 | 121.00 | OK | |
| r-oldrel-macos-arm64 | 1.4.0 | OK | ||||
| r-oldrel-macos-x86_64 | 1.4.0 | 5.00 | 97.00 | 102.00 | OK | |
| r-oldrel-windows-x86_64 | 1.4.0 | 13.00 | 133.00 | 146.00 | OK |
Version: 1.4.0
Check: examples
Result: ERROR
Running examples in ‘Rdiagnosislist-Ex.R’ failed
The error most likely occurred in:
> ### Name: addWordnet
> ### Title: Use WordNet to assist concept database creation
> ### Aliases: addWordnet
>
> ### ** Examples
>
> WORDNET <- data.table::data.table(cat = c('noun.body', 'noun.state'),
+ wordnetId = bit64::as.integer64('1', '2'),
+ synonyms = list(c('heart', 'pump', 'ticker'),
+ c('infection', 'infectious')),
+ parents = list('cardiovascular system',
+ 'pathologic process'),
+ adj = list('cardiac', 'infectious'))
> # Add Wordnet synonyms to a concept database table
> SNOMED <- sampleSNOMED()
> CDB_TABLE <- description(c('Heart', 'Infection'),
+ include_synonyms = TRUE)[type == 'Synonym',
+ list(conceptId, term = paste0(' ', tolower(term), ' '))]
> addWordnet(CDB_TABLE, 'noun.state', WORDNET)
Adding categories for noun.state
Error in `[.data.table`(MERGELINK_SYNGROUPS, , `:=`(OK, length(setdiff(conceptIds_WN[[1]], :
attempt access index 3/3 in VECTOR_ELT
Calls: addWordnet -> [ -> [.data.table
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc