Last updated on 2026-04-02 00:54:12 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.0 | 37.70 | 392.59 | 430.29 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.0.0 | 27.57 | 277.43 | 305.00 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.0.0 | 71.00 | 613.22 | 684.22 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.0.0 | 69.00 | 545.80 | 614.80 | ERROR | |
| r-devel-macos-arm64 | 1.0.0 | 11.00 | 109.00 | 120.00 | OK | |
| r-devel-windows-x86_64 | 1.0.0 | 39.00 | 334.00 | 373.00 | OK | |
| r-patched-linux-x86_64 | 1.0.0 | 37.38 | 372.06 | 409.44 | OK | |
| r-release-linux-x86_64 | 1.0.0 | 33.92 | 365.70 | 399.62 | OK | |
| r-release-macos-arm64 | 1.0.0 | OK | ||||
| r-release-macos-x86_64 | 1.0.0 | 25.00 | 344.00 | 369.00 | OK | |
| r-release-windows-x86_64 | 1.0.0 | 40.00 | 339.00 | 379.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.0 | OK | ||||
| r-oldrel-macos-x86_64 | 1.0.0 | 25.00 | 242.00 | 267.00 | OK | |
| r-oldrel-windows-x86_64 | 1.0.0 | 50.00 | 446.00 | 496.00 | OK |
Version: 1.0.0
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Dadong Zhang <dadong.zhang.shared@gmail.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "Dadong",
family = "Zhang",
role = c("aut", "cre"),
email = "dadong.zhang.shared@gmail.com")
as necessary.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘test_subtype.R’ [24s/54s]
Running the tests in ‘tests/test_subtype.R’ failed.
Complete output:
> library(testthat)
> library(OncoSubtype)
Loading required package: SummarizedExperiment
Loading required package: MatrixGenerics
Loading required package: matrixStats
Attaching package: 'MatrixGenerics'
The following objects are masked from 'package:matrixStats':
colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse,
colCounts, colCummaxs, colCummins, colCumprods, colCumsums,
colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs,
colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats,
colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds,
colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads,
colWeightedMeans, colWeightedMedians, colWeightedSds,
colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet,
rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods,
rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps,
rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins,
rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks,
rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars,
rowWeightedMads, rowWeightedMeans, rowWeightedMedians,
rowWeightedSds, rowWeightedVars
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: generics
Attaching package: 'generics'
The following objects are masked from 'package:base':
as.difftime, as.factor, as.ordered, intersect, is.element, setdiff,
setequal, union
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, is.unsorted, lapply,
mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
rank, rbind, rownames, sapply, saveRDS, table, tapply, unique,
unsplit, which.max, which.min
Loading required package: S4Vectors
Attaching package: 'S4Vectors'
The following object is masked from 'package:utils':
findMatches
The following objects are masked from 'package:base':
I, expand.grid, unname
Loading required package: IRanges
Loading required package: Seqinfo
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Attaching package: 'Biobase'
The following object is masked from 'package:MatrixGenerics':
rowMedians
The following objects are masked from 'package:matrixStats':
anyMissing, rowMedians
>
> test_that(desc = "Whether subtype function works properly", {
+ data <- get_median_centered(example_fpkm)
+ data <- assays(data)$centered
+ rownames(data) <- rowData(example_fpkm)$external_gene_name
+ res <- ml_subtype(data)
+ expect_equal(class(res)[1], "SubtypeClass")
+ })
trying URL 'https://raw.githubusercontent.com/DadongZ/OncoSubtype_data/main/data/lusc_tcga.rda'
── Warning: Whether subtype function works properly ────────────────────────────
cannot open URL 'https://raw.githubusercontent.com/DadongZ/OncoSubtype_data/main/data/lusc_tcga.rda': HTTP status was '429 Unknown Error'
Backtrace:
▆
1. └─OncoSubtype::ml_subtype(data)
2. └─OncoSubtype::load_dataset_from_github(disease = disease)
3. └─utils::download.file(url, destfile = local_dataset_path, mode = "wb")
── Error: Whether subtype function works properly ──────────────────────────────
Error in `download.file(url, destfile = local_dataset_path, mode = "wb")`: cannot open URL 'https://raw.githubusercontent.com/DadongZ/OncoSubtype_data/main/data/lusc_tcga.rda'
Backtrace:
▆
1. └─OncoSubtype::ml_subtype(data)
2. └─OncoSubtype::load_dataset_from_github(disease = disease)
3. └─utils::download.file(url, destfile = local_dataset_path, mode = "wb")
Error:
! Test failed with 1 failure and 0 successes.
Backtrace:
▆
1. └─testthat::test_that(...)
2. └─testthat:::test_code(code, parent.frame())
3. ├─withr (local) `<fn>`()
4. └─reporter$end_test(context = reporter$.context, test = test)
5. └─cli::cli_abort(...)
6. └─rlang::abort(...)
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc