Last updated on 2025-12-20 17:50:31 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.6.3 | 17.50 | 63.61 | 81.11 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.6.3 | 10.25 | 46.46 | 56.71 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.6.3 | 25.00 | 92.72 | 117.72 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 0.6.3 | 26.00 | 102.66 | 128.66 | ERROR | |
| r-devel-windows-x86_64 | 0.6.3 | 21.00 | 115.00 | 136.00 | OK | |
| r-patched-linux-x86_64 | 0.6.3 | 15.67 | 63.21 | 78.88 | OK | |
| r-release-linux-x86_64 | 0.6.3 | 13.64 | 63.49 | 77.13 | OK | |
| r-release-macos-arm64 | 0.6.2 | 9.00 | 21.00 | 30.00 | OK | |
| r-release-macos-x86_64 | 0.6.3 | 13.00 | 110.00 | 123.00 | OK | |
| r-release-windows-x86_64 | 0.6.3 | 18.00 | 115.00 | 133.00 | OK | |
| r-oldrel-macos-arm64 | 0.6.3 | 4.00 | 30.00 | 34.00 | OK | |
| r-oldrel-macos-x86_64 | 0.6.3 | 14.00 | 95.00 | 109.00 | OK | |
| r-oldrel-windows-x86_64 | 0.6.3 | 24.00 | 135.00 | 159.00 | OK |
Version: 0.6.3
Check: examples
Result: ERROR
Running examples in ‘LWFBrook90R-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: process_outputs_LWFB90
> ### Title: Aggregate and group model outputs similar to ancient LWFB90
> ### textfile outputs (.ASC-files)
> ### Aliases: process_outputs_LWFB90
>
> ### ** Examples
>
> data("slb1_soil")
> data("slb1_meteo")
> opts <- set_optionsLWFB90(startdate = as.Date("2002-06-01"), enddate = as.Date("2002-06-05"))
> parms <- set_paramLWFB90()
> soil <- cbind(slb1_soil, hydpar_wessolek_tab(texture = slb1_soil$texture))
>
> outsel <- set_outputLWFB90()
> outsel[,] <- 1L
>
> res <- run_LWFB90(options_b90 = opts,
+ param_b90 = parms,
+ climate = slb1_meteo,
+ soil = soil)
Error in `[.data.table`(soil_dt, , `:=`(mat, .GRP), by = list(ths, thr, :
attempt access index 17/17 in VECTOR_ELT
Calls: run_LWFB90 -> soil_to_param -> [ -> [.data.table
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.6.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [5s/11s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(LWFBrook90R)
>
> test_check("LWFBrook90R")
Saving _problems/test-multirun-13.R
Saving _problems/test-options-18.R
Saving _problems/test-runLWFB90-17.R
Saving _problems/test-runLWFB90_errors-26.R
[ FAIL 4 | WARN 0 | SKIP 1 | PASS 9 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• Will fail as long as the source codes differ slightly?! (1):
'test-output_vs_b90exe.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-multirun.R:13:1'): (code run outside of `test_that()`) ─────────
Error in ``[.data.table`(soil_dt, , `:=`(mat, .GRP), by = list(ths, thr, alpha, npar, ksat, tort, gravel))`: attempt access index 17/17 in VECTOR_ELT
Backtrace:
▆
1. └─LWFBrook90R::soil_to_param(soil) at test-multirun.R:13:1
2. ├─...[]
3. └─data.table:::`[.data.table`(...)
── Error ('test-options.R:15:3'): Precipitation correction works ───────────────
Error in ``[.data.table`(soil_dt, , `:=`(mat, .GRP), by = list(ths, thr, alpha, npar, ksat, tort, gravel))`: attempt access index 17/17 in VECTOR_ELT
Backtrace:
▆
1. └─LWFBrook90R::run_LWFB90(...) at test-options.R:15:3
2. └─LWFBrook90R::soil_to_param(soil, options_b90$imodel)
3. ├─...[]
4. └─data.table:::`[.data.table`(...)
── Error ('test-runLWFB90.R:14:1'): (code run outside of `test_that()`) ────────
Error in ``[.data.table`(soil_dt, , `:=`(mat, .GRP), by = list(ths, thr, alpha, npar, ksat, tort, gravel))`: attempt access index 17/17 in VECTOR_ELT
Backtrace:
▆
1. └─LWFBrook90R::run_LWFB90(...) at test-runLWFB90.R:14:1
2. └─LWFBrook90R::soil_to_param(soil, options_b90$imodel)
3. ├─...[]
4. └─data.table:::`[.data.table`(...)
── Error ('test-runLWFB90_errors.R:26:1'): (code run outside of `test_that()`) ──
Error in ``[.data.table`(soil_dt, , `:=`(mat, .GRP), by = list(ths, thr, alpha, npar, ksat, tort, gravel))`: attempt access index 17/17 in VECTOR_ELT
Backtrace:
▆
1. └─LWFBrook90R::soil_to_param(soil_bad) at test-runLWFB90_errors.R:26:1
2. ├─...[]
3. └─data.table:::`[.data.table`(...)
[ FAIL 4 | WARN 0 | SKIP 1 | PASS 9 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.6.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘LWFBook90R-1-Intro.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘LWFBook90R-1-Intro.Rmd’
--- re-building ‘LWFBrook90R-2-Options_Param.Rmd’ using rmarkdown
Quitting from LWFBrook90R-2-Options_Param.Rmd:301-325 [unnamed-chunk-10]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 17/17 in VECTOR_ELT
---
Backtrace:
▆
1. └─LWFBrook90R::run_LWFB90(...)
2. └─LWFBrook90R::soil_to_param(soil, options_b90$imodel)
3. ├─...[]
4. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'LWFBrook90R-2-Options_Param.Rmd' failed with diagnostics:
attempt access index 17/17 in VECTOR_ELT
--- failed re-building ‘LWFBrook90R-2-Options_Param.Rmd’
--- re-building ‘LWFBrook90R-3-Multiruns.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘LWFBrook90R-3-Multiruns.Rmd’
--- re-building ‘LWFBrook90R-4-Multisite-Runs.Rmd’ using rmarkdown
Quitting from LWFBrook90R-4-Multisite-Runs.Rmd:109-117 [unnamed-chunk-8]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 17/17 in VECTOR_ELT
---
Backtrace:
▆
1. └─LWFBrook90R::run_LWFB90(...)
2. └─LWFBrook90R::soil_to_param(soil, options_b90$imodel)
3. ├─...[]
4. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'LWFBrook90R-4-Multisite-Runs.Rmd' failed with diagnostics:
attempt access index 17/17 in VECTOR_ELT
--- failed re-building ‘LWFBrook90R-4-Multisite-Runs.Rmd’
SUMMARY: processing the following files failed:
‘LWFBrook90R-2-Options_Param.Rmd’ ‘LWFBrook90R-4-Multisite-Runs.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.6.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [4s/8s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(LWFBrook90R)
>
> test_check("LWFBrook90R")
Saving _problems/test-multirun-13.R
Saving _problems/test-options-18.R
Saving _problems/test-runLWFB90-17.R
Saving _problems/test-runLWFB90_errors-26.R
[ FAIL 4 | WARN 0 | SKIP 1 | PASS 9 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• Will fail as long as the source codes differ slightly?! (1):
'test-output_vs_b90exe.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-multirun.R:13:1'): (code run outside of `test_that()`) ─────────
Error in ``[.data.table`(soil_dt, , `:=`(mat, .GRP), by = list(ths, thr, alpha, npar, ksat, tort, gravel))`: attempt access index 17/17 in VECTOR_ELT
Backtrace:
▆
1. └─LWFBrook90R::soil_to_param(soil) at test-multirun.R:13:1
2. ├─...[]
3. └─data.table:::`[.data.table`(...)
── Error ('test-options.R:15:3'): Precipitation correction works ───────────────
Error in ``[.data.table`(soil_dt, , `:=`(mat, .GRP), by = list(ths, thr, alpha, npar, ksat, tort, gravel))`: attempt access index 17/17 in VECTOR_ELT
Backtrace:
▆
1. └─LWFBrook90R::run_LWFB90(...) at test-options.R:15:3
2. └─LWFBrook90R::soil_to_param(soil, options_b90$imodel)
3. ├─...[]
4. └─data.table:::`[.data.table`(...)
── Error ('test-runLWFB90.R:14:1'): (code run outside of `test_that()`) ────────
Error in ``[.data.table`(soil_dt, , `:=`(mat, .GRP), by = list(ths, thr, alpha, npar, ksat, tort, gravel))`: attempt access index 17/17 in VECTOR_ELT
Backtrace:
▆
1. └─LWFBrook90R::run_LWFB90(...) at test-runLWFB90.R:14:1
2. └─LWFBrook90R::soil_to_param(soil, options_b90$imodel)
3. ├─...[]
4. └─data.table:::`[.data.table`(...)
── Error ('test-runLWFB90_errors.R:26:1'): (code run outside of `test_that()`) ──
Error in ``[.data.table`(soil_dt, , `:=`(mat, .GRP), by = list(ths, thr, alpha, npar, ksat, tort, gravel))`: attempt access index 17/17 in VECTOR_ELT
Backtrace:
▆
1. └─LWFBrook90R::soil_to_param(soil_bad) at test-runLWFB90_errors.R:26:1
2. ├─...[]
3. └─data.table:::`[.data.table`(...)
[ FAIL 4 | WARN 0 | SKIP 1 | PASS 9 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.6.3
Check: examples
Result: ERROR
Running examples in ‘LWFBrook90R-Ex.R’ failed
The error most likely occurred in:
> ### Name: process_outputs_LWFB90
> ### Title: Aggregate and group model outputs similar to ancient LWFB90
> ### textfile outputs (.ASC-files)
> ### Aliases: process_outputs_LWFB90
>
> ### ** Examples
>
> data("slb1_soil")
> data("slb1_meteo")
> opts <- set_optionsLWFB90(startdate = as.Date("2002-06-01"), enddate = as.Date("2002-06-05"))
> parms <- set_paramLWFB90()
> soil <- cbind(slb1_soil, hydpar_wessolek_tab(texture = slb1_soil$texture))
>
> outsel <- set_outputLWFB90()
> outsel[,] <- 1L
>
> res <- run_LWFB90(options_b90 = opts,
+ param_b90 = parms,
+ climate = slb1_meteo,
+ soil = soil)
Error in `[.data.table`(soil_dt, , `:=`(mat, .GRP), by = list(ths, thr, :
attempt access index 17/17 in VECTOR_ELT
Calls: run_LWFB90 -> soil_to_param -> [ -> [.data.table
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.6.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [8s/19s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(LWFBrook90R)
>
> test_check("LWFBrook90R")
Saving _problems/test-multirun-13.R
Saving _problems/test-options-18.R
Saving _problems/test-runLWFB90-17.R
Saving _problems/test-runLWFB90_errors-26.R
[ FAIL 4 | WARN 0 | SKIP 1 | PASS 9 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• Will fail as long as the source codes differ slightly?! (1):
'test-output_vs_b90exe.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-multirun.R:13:1'): (code run outside of `test_that()`) ─────────
Error in ``[.data.table`(soil_dt, , `:=`(mat, .GRP), by = list(ths, thr, alpha, npar, ksat, tort, gravel))`: attempt access index 17/17 in VECTOR_ELT
Backtrace:
▆
1. └─LWFBrook90R::soil_to_param(soil) at test-multirun.R:13:1
2. ├─...[]
3. └─data.table:::`[.data.table`(...)
── Error ('test-options.R:15:3'): Precipitation correction works ───────────────
Error in ``[.data.table`(soil_dt, , `:=`(mat, .GRP), by = list(ths, thr, alpha, npar, ksat, tort, gravel))`: attempt access index 17/17 in VECTOR_ELT
Backtrace:
▆
1. └─LWFBrook90R::run_LWFB90(...) at test-options.R:15:3
2. └─LWFBrook90R::soil_to_param(soil, options_b90$imodel)
3. ├─...[]
4. └─data.table:::`[.data.table`(...)
── Error ('test-runLWFB90.R:14:1'): (code run outside of `test_that()`) ────────
Error in ``[.data.table`(soil_dt, , `:=`(mat, .GRP), by = list(ths, thr, alpha, npar, ksat, tort, gravel))`: attempt access index 17/17 in VECTOR_ELT
Backtrace:
▆
1. └─LWFBrook90R::run_LWFB90(...) at test-runLWFB90.R:14:1
2. └─LWFBrook90R::soil_to_param(soil, options_b90$imodel)
3. ├─...[]
4. └─data.table:::`[.data.table`(...)
── Error ('test-runLWFB90_errors.R:26:1'): (code run outside of `test_that()`) ──
Error in ``[.data.table`(soil_dt, , `:=`(mat, .GRP), by = list(ths, thr, alpha, npar, ksat, tort, gravel))`: attempt access index 17/17 in VECTOR_ELT
Backtrace:
▆
1. └─LWFBrook90R::soil_to_param(soil_bad) at test-runLWFB90_errors.R:26:1
2. ├─...[]
3. └─data.table:::`[.data.table`(...)
[ FAIL 4 | WARN 0 | SKIP 1 | PASS 9 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.6.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘LWFBook90R-1-Intro.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘LWFBook90R-1-Intro.Rmd’
--- re-building ‘LWFBrook90R-2-Options_Param.Rmd’ using rmarkdown
Quitting from LWFBrook90R-2-Options_Param.Rmd:301-325 [unnamed-chunk-10]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 17/17 in VECTOR_ELT
---
Backtrace:
▆
1. └─LWFBrook90R::run_LWFB90(...)
2. └─LWFBrook90R::soil_to_param(soil, options_b90$imodel)
3. ├─...[]
4. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'LWFBrook90R-2-Options_Param.Rmd' failed with diagnostics:
attempt access index 17/17 in VECTOR_ELT
--- failed re-building ‘LWFBrook90R-2-Options_Param.Rmd’
--- re-building ‘LWFBrook90R-3-Multiruns.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘LWFBrook90R-3-Multiruns.Rmd’
--- re-building ‘LWFBrook90R-4-Multisite-Runs.Rmd’ using rmarkdown
Quitting from LWFBrook90R-4-Multisite-Runs.Rmd:109-117 [unnamed-chunk-8]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 17/17 in VECTOR_ELT
---
Backtrace:
▆
1. └─LWFBrook90R::run_LWFB90(...)
2. └─LWFBrook90R::soil_to_param(soil, options_b90$imodel)
3. ├─...[]
4. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'LWFBrook90R-4-Multisite-Runs.Rmd' failed with diagnostics:
attempt access index 17/17 in VECTOR_ELT
--- failed re-building ‘LWFBrook90R-4-Multisite-Runs.Rmd’
SUMMARY: processing the following files failed:
‘LWFBrook90R-2-Options_Param.Rmd’ ‘LWFBrook90R-4-Multisite-Runs.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.6.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [7s/15s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(LWFBrook90R)
>
> test_check("LWFBrook90R")
Saving _problems/test-multirun-13.R
Saving _problems/test-options-18.R
Saving _problems/test-runLWFB90-17.R
Saving _problems/test-runLWFB90_errors-26.R
[ FAIL 4 | WARN 0 | SKIP 1 | PASS 9 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• Will fail as long as the source codes differ slightly?! (1):
'test-output_vs_b90exe.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-multirun.R:13:1'): (code run outside of `test_that()`) ─────────
Error in ``[.data.table`(soil_dt, , `:=`(mat, .GRP), by = list(ths, thr, alpha, npar, ksat, tort, gravel))`: attempt access index 17/17 in VECTOR_ELT
Backtrace:
▆
1. └─LWFBrook90R::soil_to_param(soil) at test-multirun.R:13:1
2. ├─...[]
3. └─data.table:::`[.data.table`(...)
── Error ('test-options.R:15:3'): Precipitation correction works ───────────────
Error in ``[.data.table`(soil_dt, , `:=`(mat, .GRP), by = list(ths, thr, alpha, npar, ksat, tort, gravel))`: attempt access index 17/17 in VECTOR_ELT
Backtrace:
▆
1. └─LWFBrook90R::run_LWFB90(...) at test-options.R:15:3
2. └─LWFBrook90R::soil_to_param(soil, options_b90$imodel)
3. ├─...[]
4. └─data.table:::`[.data.table`(...)
── Error ('test-runLWFB90.R:14:1'): (code run outside of `test_that()`) ────────
Error in ``[.data.table`(soil_dt, , `:=`(mat, .GRP), by = list(ths, thr, alpha, npar, ksat, tort, gravel))`: attempt access index 17/17 in VECTOR_ELT
Backtrace:
▆
1. └─LWFBrook90R::run_LWFB90(...) at test-runLWFB90.R:14:1
2. └─LWFBrook90R::soil_to_param(soil, options_b90$imodel)
3. ├─...[]
4. └─data.table:::`[.data.table`(...)
── Error ('test-runLWFB90_errors.R:26:1'): (code run outside of `test_that()`) ──
Error in ``[.data.table`(soil_dt, , `:=`(mat, .GRP), by = list(ths, thr, alpha, npar, ksat, tort, gravel))`: attempt access index 17/17 in VECTOR_ELT
Backtrace:
▆
1. └─LWFBrook90R::soil_to_param(soil_bad) at test-runLWFB90_errors.R:26:1
2. ├─...[]
3. └─data.table:::`[.data.table`(...)
[ FAIL 4 | WARN 0 | SKIP 1 | PASS 9 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc