Package: phylorug
Title: Visualize Clade Recovery and Support Across Phylogenetic Trees
Version: 0.1.0
Authors@R: c(
     person("Md Rifath", "Ahamed", , "rifathahamed777@gmail.com",
           role = c("aut", "cre", "cph"),
           comment = c(ORCID = "0009-0005-6158-8658")),
    person("J. Salvador", "Arias", , "js.arias@conicet.gov.ar",
           role = "aut",
           comment = c(ORCID = "0000-0002-3717-435X")),
    person("Sergei", "Tarasov", , "sergei.tarasov@helsinki.fi",
           role = "aut",
           comment = c(ORCID = "0000-0002-1737-9403"))
    )
Description: Generates rug plot visualizations directly on tree nodes to
    illustrate clade recovery and support from multiple phylogenetic and
    phylogenomic analyses. As modern studies routinely employ diverse
    datasets and inference techniques producing potentially conflicting
    trees, 'phylorug' simplifies the comparison among these trees by
    consolidating clade recovery and support on a reference tree.
License: MIT + file LICENSE
URL: https://github.com/mdrifathahamed/phylorug,
        https://mdrifathahamed.github.io/phylorug/
BugReports: https://github.com/mdrifathahamed/phylorug/issues
Depends: R (>= 4.1.0)
Imports: ape, graphics, grDevices, phangorn, stats, tools, utils
Suggests: knitr, mockery, rmarkdown, testthat (>= 3.0.0)
Config/testthat/edition: 3
Encoding: UTF-8
LazyData: true
RoxygenNote: 8.0.0
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2026-10-23 08:02:53 UTC; 1
Author: Md Rifath Ahamed [aut, cre, cph] (ORCID:
    <https://orcid.org/0009-0005-6158-8658>),
  J. Salvador Arias [aut] (ORCID:
    <https://orcid.org/0000-0002-3717-435X>),
  Sergei Tarasov [aut] (ORCID: <https://orcid.org/0000-0002-1737-9403>)
Maintainer: Md Rifath Ahamed <rifathahamed777@gmail.com>
Repository: CRAN
Date/Publication: 2026-11-06 16:50:02 UTC
