# Generated by roxygen2: do not edit by hand

S3method(CalcR2CvCorrected,default)
S3method(CalcR2CvCorrected,lm)
S3method(DeltaZCorr,default)
S3method(DeltaZCorr,list)
S3method(EigenTensorDecomposition,default)
S3method(EigenTensorDecomposition,list)
S3method(KrzCor,default)
S3method(KrzCor,list)
S3method(KrzCor,mcmc_sample)
S3method(KrzProjection,default)
S3method(KrzProjection,list)
S3method(MantelCor,default)
S3method(MantelCor,list)
S3method(MantelCor,mcmc_sample)
S3method(MantelModTest,default)
S3method(MantelModTest,list)
S3method(MatrixCor,default)
S3method(MatrixCor,list)
S3method(MatrixCor,mcmc_sample)
S3method(MatrixDistance,default)
S3method(MatrixDistance,list)
S3method(PCAsimilarity,default)
S3method(PCAsimilarity,list)
S3method(PCAsimilarity,mcmc_sample)
S3method(PrintMatrix,default)
S3method(PrintMatrix,list)
S3method(RandomSkewers,default)
S3method(RandomSkewers,list)
S3method(RandomSkewers,mcmc_sample)
S3method(SRD,default)
S3method(SRD,list)
S3method(plot,SRD)
S3method(print,mcmc_sample)
export(AlphaRep)
export(Autonomy)
export(BayesianCalculateMatrix)
export(BootstrapR2)
export(BootstrapRep)
export(BootstrapStat)
export(CalcAVG)
export(CalcEigenVar)
export(CalcICV)
export(CalcR2)
export(CalcR2CvCorrected)
export(CalcRepeatability)
export(CalculateMatrix)
export(Center2MeanJacobianFast)
export(ConditionalEvolvability)
export(Constraints)
export(CreateHypotMatrix)
export(DeltaZCorr)
export(DriftTest)
export(EigenTensorDecomposition)
export(Evolvability)
export(ExtendMatrix)
export(Flexibility)
export(JackKnifeMINT)
export(JacobianArray)
export(KrzCor)
export(KrzProjection)
export(KrzSubspace)
export(KrzSubspaceBootstrap)
export(KrzSubspaceDataFrame)
export(LModularity)
export(LocalShapeVariables)
export(MINT)
export(MantelCor)
export(MantelModTest)
export(MatrixCompare)
export(MatrixCor)
export(MatrixDistance)
export(MeanMatrix)
export(MeanMatrixStatistics)
export(MonteCarloR2)
export(MonteCarloRep)
export(MonteCarloStat)
export(MultiMahalanobis)
export(MultivDriftTest)
export(Norm)
export(Normalize)
export(OverlapDist)
export(PCAsimilarity)
export(PCScoreCorrelation)
export(Partition2HypotMatrix)
export(Pc1Percent)
export(PhyloCompare)
export(PhyloMantel)
export(PhyloW)
export(PlotKrzSubspace)
export(PlotRSprojection)
export(PlotRarefaction)
export(PlotTreeDriftTest)
export(PrintMatrix)
export(ProjectMatrix)
export(RSProjection)
export(RandomMatrix)
export(RandomSkewers)
export(Rarefaction)
export(RarefactionStat)
export(RelativeEigenanalysis)
export(RemoveSize)
export(Respondability)
export(RevertMatrix)
export(RiemannDist)
export(Rotate2MidlineMatrix)
export(SRD)
export(TPS)
export(TestModularity)
export(TreeDriftTest)
import(plyr)
importFrom(MCMCpack,riwish)
importFrom(Matrix,
  Matrix,
  Schur,
  bdiag,
  chol,
  diag,
  nearPD,
  solve
)
importFrom(Morpho,
  ProcGPA,
  arrMean3,
  cSize
)
importFrom(ape,
  cophenetic.phylo,
  nodelabels,
  reorder.phylo
)
importFrom(coda,
  HPDinterval,
  as.mcmc
)
importFrom(expm,
  expm,
  logm,
  sqrtm
)
importFrom(ggplot2,
  aes,
  aes_string,
  element_text,
  facet_wrap,
  geom_boxplot,
  geom_errorbar,
  geom_point,
  geom_pointrange,
  geom_smooth,
  geom_text,
  ggplot,
  labs,
  layer,
  position_dodge,
  scale_x_continuous,
  scale_y_continuous,
  theme,
  theme_bw,
  xlab,
  ylab
)
importFrom(grDevices,rgb)
importFrom(graphics,
  abline,
  arrows,
  axis,
  layout,
  mtext,
  par,
  plot,
  text
)
importFrom(igraph,
  graph.adjacency,
  optimal.community
)
importFrom(methods,is)
importFrom(mvtnorm,
  dmvnorm,
  rmvnorm
)
importFrom(numDeriv,jacobian)
importFrom(plyr,
  aaply,
  alply,
  laply
)
importFrom(reshape2,
  acast,
  dcast,
  melt
)
importFrom(stats,
  anova,
  as.formula,
  confint,
  cor,
  cor.test,
  cov,
  cov2cor,
  lm,
  mahalanobis,
  median,
  na.omit,
  princomp,
  quantile,
  rbeta,
  reorder,
  residuals,
  rnorm,
  runif,
  sd,
  spline,
  var
)
importFrom(utils,
  write.csv,
  write.table
)
importFrom(vegan,mantel)
useDynLib(evolqg)
