592fc5ca73f012d520c52d72443c8731 *DESCRIPTION
7df54cbef5c5b31a9dd3e825ef94caed *NAMESPACE
276fa9a63f25eb682faf4aff8653b956 *R/01-cipher.R
43e5ab68e76d22eb81064995580a9790 *R/02-needelman.R
5765659c3613cf887dd9c2b7fe585c0e *R/03-svalign.R
c49cd72806f8b3064ccdda555d28b9c8 *R/04-KMers.R
106f8e480ef7f32dc9ba98ef252a27f8 *R/05-stringGraph.R
f338e080fd98078f40f3e8872f6ac7dd *R/06-breakpoints.R
ad15be8e8792b16c918d8f99032b7385 *R/07-debruijn.R
45dd95f763afef96121611b249c957e2 *R/08-evidence.R
d6e9c30d0d386e6cf643e77ca8e74a9a *TODO
5dc6914adda8c3364a14d94258343496 *build/vignette.rds
7fbeaf1360b5d5fabff46a6d3b0d349a *data/GUMC395-bp.rda
91902ba54eb0e13554aac3bd7c41c634 *data/GUMC395-lr.rda
10e4b856a2a89eae6a3b9991f1d008b6 *data/breakpoints.rda
fbbafcfdb02452359f25889d54704e2a *data/longreads.rda
119fe0d9cdccc2fedf1e14c337bae764 *inst/doc/SVAlignR.html
8aca24a9902646417dcb5f6bd0196245 *inst/doc/SVAlignR.html.asis
024dfb69c0a4f7b08cc9f9ada589490c *inst/vignette-source/SVAlignR.Rmd
ca70e61d7396801ee48fc3e4d731fb38 *inst/vignette-source/test-03-align.R
a61c512e531a35d39505c26e9e6df675 *inst/vignette-source/test-03-align.Rout.save
a90c9f4e10a1b4fe9cab54144b99e346 *man/00-datasets.Rd
2d3f1f7e2cb6af837d21ee2a3c7fc8b4 *man/01-cipher.Rd
e5676b6a423db43adf63d4b1c4a33a8d *man/02-seqclust.Rd
63b47cd83c620932b4ab61d8f5d08d7f *man/03-align.Rd
b6c1f30abc8ed5ec9b8c38ee189c0ff1 *man/05-stringGraph.Rd
530cbb9d293f5c56fb73962ec11c24b0 *man/06-words.Rd
35f56d264aaf20c959e4eef0bd180d91 *man/07-breakpoints.Rd
42171fd8d1c61dfa6d53e366c0def458 *man/08-debruijn.Rd
d73f97cdd8e0bd86145199d28a938725 *man/09-evidence.Rd
57e6092aada7786a0ee6209fe2ea9322 *tests/test-01-cipher.R
160a446b0e5c56dd8bda69d168e49d6b *tests/test-01-cipher.Rout.save
9d0dfa0c0624b482464fe301083dde90 *tests/test-02-seqclus.R
d3ff746072795be54ce02df7f8687e2d *tests/test-02-seqclus.Rout.save
06eceb6b8762d6bc6b7f70ac3bda6adb *tests/test-04-sg.R
884ea858b21b53e55f1ba55f31e41550 *tests/test-05-words.R
7baf1afa796b83a604e8c5226b3874f8 *tests/test-05-words.Rout.save
8aca24a9902646417dcb5f6bd0196245 *vignettes/SVAlignR.html.asis
