c33b67d21900929d4fdc90bb54513ae0 *DESCRIPTION
0ab4b5909f8c7319e5cb11bd15931682 *NAMESPACE
5d8ce346339f50c0e03ab10b6c7b044f *NEWS.md
71e4c9f1f3b62dc6d08613c11dee75f3 *R/GenerateInput.R
155df980e1bab24a837689ba49e7df89 *R/ModelTraining.R
60f3873e241f0b46e956b5b980a0d5f8 *R/PredictCellType.R
be3899dcdcb8a5f9e6dfd44e9bd0e6aa *R/PretrainedModels.R
6ee71f5836087dc6738abe826d83f80a *R/VisualizeOutput.R
b589e76c0a22f53b4b5623196aa90321 *R/globals.R
22e524576892f3e7c9a05df101cbacf8 *R/sysdata.rda
d5ee046d58245f200f1c7160e257271d *R/utils.R
e2ab697efce39068dbf02056cfad3168 *README.md
63f359376ee18e6680ea3d91e4b2dd11 *build/vignette.rds
70f250831c5ce2e57e834ef3684cbf58 *inst/doc/MethScope-Input.R
65b2e77e5275763e2ec5fb2ff9d292dd *inst/doc/MethScope-Input.Rmd
2f24df711e6627412d611fb862ea1d9e *inst/doc/MethScope-Input.html
0838988fbc0ea2a55083b068726acbc4 *inst/doc/MethScope-MRMP.R
e8f724ca67e3c3a943efc2ea37b5f610 *inst/doc/MethScope-MRMP.Rmd
31ee775f9204a8a7a9173af45046e1e3 *inst/doc/MethScope-MRMP.html
dc8fc7127121be0c560fd0976f17321c *inst/doc/MethScope-Tutorial.R
39c83f419b53369c11a6321c7cd668bf *inst/doc/MethScope-Tutorial.Rmd
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5e270ae6034b339c2a13d20a5f7d2dec *inst/doc/agent-skill.R
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5e270ae6034b339c2a13d20a5f7d2dec *inst/doc/methscope-cli.R
5f97e16290a3b69502a33c5e027a053b *inst/doc/methscope-cli.Rmd
8f9ec3bf4b84e230fcd74a945ef2b719 *inst/doc/methscope-cli.html
3b22e2ad63ff485f4feb1ba6f4e0b653 *inst/doc/pretrained-models.R
412619a2507e64c687c5b25731c74ada *inst/doc/pretrained-models.Rmd
5d995259a93bf0d26ab9fc42162adf07 *inst/doc/pretrained-models.html
ff176fb7fcff6667e89d48ebe4801480 *inst/extdata/example_label.csv
7dc5ea09cbae2a32e002b46eaf057070 *inst/extdata/hg38_Zhou2025_ref.rds
e4688ce149f114aa5c14685de60d652d *inst/extdata/mm10_Liu2021_ref.rds
9188adac22af8c7ffb1a64e92ebafba0 *inst/extdata/models/Liu2021_MouseBrain_P1000.ubj.gz
93f12cb07c4f3d783874e42e04578f8d *inst/extdata/models/Zhou2025_HumanAtlas_P1000.ubj.gz
8d865fd67287dcb1255775f23bf68b66 *inst/extdata/toy.cg
2840d6e93a635738fb5b825eb7fcb497 *inst/extdata/toy.cg.idx
dfc637d940d1f1096152c1a48619d42d *inst/extdata/toy.cm
f269be4f10bac48ec0dc00af309cfaed *man/GenerateInput.Rd
9d1de5a0e1c81898860eda55e9d27e5b *man/GenerateReference.Rd
2c1a65ad05d7ce336e8f84842e9c4761 *man/Input_training.Rd
881dbe317b39e7bb3f3e3b0e9c8bb0fe *man/Liu2021_MouseBrain_P1000.Rd
64238856224a4e591076157d36f59abc *man/PlotConfusion.Rd
9cc2f3c5173764a3a880f28cfd5b969e *man/PlotF1.Rd
c0d395372925282c3394a1cc3fb90c9a *man/PlotUMAP.Rd
c318c8c269bf48a18b9787c6badcd8ed *man/PlotUMAP_fixedwindow.Rd
b46b52b96461fc1d0e9da5c6e33c9fa9 *man/PredictCellType.Rd
5d2647b22a4332b23d842c354eaed02f *man/Zhou2025_HumanAtlas_P1000.Rd
0762f779ac6cce9e4b76ea62d53136cc *man/confidence_score.Rd
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7dce6682abfb1389686b027745d7a71c *man/figures/overview.png
42a812a37f82e4e80a6fc00b528edc0c *man/filter_cell.Rd
094161d77803fdeb6175c62b952ba8b7 *man/imputeRowMean.Rd
01210402db539170a43f699072bd948b *man/nnls_deconv.Rd
42f17958a8476003ff7fb4fcdf38c18c *man/smooth_matrix.Rd
a29a53ba81df85018fcdc8f4d998dea6 *src/Makevars
bb129d7e7fc8523f79e9bf0bc43c608e *src/bgzf.c
d3381bbe663a7134781129f44047d996 *src/bgzf.h
cc3d1dd896269e7a85b0e1379fc38a1c *src/cdata.h
bff1fa583e3ea8fc926a6d078950151a *src/cfile.c
9694bddaa097916e6b765e2d5b80751d *src/cfile.h
cc045ad9c602302b10f560ed4b55abae *src/decompress.c
9923a552c74b057df184127794a14b09 *src/format.c
c6b0223afe51762368de91ed5744e384 *src/format2.c
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5e0f2cea22ce831c3c77ce7d7fab5848 *src/format6.c
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7fc9c51835f3f6cf6123d10419f2f1bc *src/khash.h
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996746aac154d40c6fe98b7eb1b3bf01 *src/snames.h
c0c8f83a8d8057b8af189790f9f56797 *src/summary.c
c0cfd8a8df53879abe8f5d08a43bf7e5 *src/wvec.h
10d6bae7725f0d4bf83da570927deeef *src/wzbed.h
51b196cbff1b534192d9c701a3d0dc0f *src/wzio.h
cc7d33029013ce10747db6c62d96eeff *src/wzmisc.h
7a78c1fb716041d7a8d9e102374a97be *src/wztarget.h
a74f3bfcb7bc5ee971c5d09bd07b409c *tests/testthat.R
975c4262550d76a7aa1ac6d65f9ede91 *tests/testthat/test-pretrained-models.R
65b2e77e5275763e2ec5fb2ff9d292dd *vignettes/MethScope-Input.Rmd
e8f724ca67e3c3a943efc2ea37b5f610 *vignettes/MethScope-MRMP.Rmd
39c83f419b53369c11a6321c7cd668bf *vignettes/MethScope-Tutorial.Rmd
5d23cac0556fcc543a3c8de5e72a8eb5 *vignettes/agent-skill.Rmd
c5fc71244cc23088fabb92f6721a9a0a *vignettes/figures/tutorial_confusion.png
4f3253d2b20b581fa25b89eda788d116 *vignettes/figures/tutorial_f1.png
9c9f4c5d15d1223e278f4de65982a169 *vignettes/figures/tutorial_umap.png
5f97e16290a3b69502a33c5e027a053b *vignettes/methscope-cli.Rmd
412619a2507e64c687c5b25731c74ada *vignettes/pretrained-models.Rmd
