Functions to Store, Manipulate and Display Markov Chain Monte
Carlo (MCMC) Output
![[R logo]](../../../doc/html/Rlogo.svg)
![[Up]](../../../doc/html/left.jpg)
![[Top]](../../../doc/html/up.jpg)
Documentation for package ‘mcmcOutput’ version 0.1.3
Help Pages
| acfPlot | Diagnostic graphics for class 'mcmcOutput' |
| bigCrosscorr | Cross-correlations for MCMC output |
| crosscorrPlot | Plot image of correlation matrix |
| densityFolded | Folded kernel density estimation |
| densityPlot | Diagnostic graphics for class 'mcmcOutput' |
| diagPlot | Diagnostic graphics for class 'mcmcOutput' |
| discrepancyPlot | Graphic comparison of observed vs simulated discrepancies |
| getMCE | Get diagnostic statistics |
| getNeff | Get diagnostic statistics |
| getRhat | Get diagnostic statistics |
| mcmcListExample | An object of class 'mcmc.list' produced by 'rjags::coda.samples' |
| mcmcOutput | Conversion to class 'mcmcOutput' |
| mcmcOutput-class | Conversion to class 'mcmcOutput' |
| mcmcOutput.bugs | Conversion to class 'mcmcOutput' |
| mcmcOutput.data.frame | Conversion to class 'mcmcOutput' |
| mcmcOutput.default | Conversion to class 'mcmcOutput' |
| mcmcOutput.jagsUI | Conversion to class 'mcmcOutput' |
| mcmcOutput.matrix | Conversion to class 'mcmcOutput' |
| mcmcOutput.mcmc | Conversion to class 'mcmcOutput' |
| mcmcOutput.mcmc.list | Conversion to class 'mcmcOutput' |
| mcmcOutput.rjags | Conversion to class 'mcmcOutput' |
| mcmcOutput.runjags | Conversion to class 'mcmcOutput' |
| plot.mcmcOutput | Graphic display of marginal posterior probability distributions |
| postPlot | Graphic display of marginal posterior probability distributions |
| postPriorOverlap | Overlap between posterior and prior probability distributions. |
| print.mcmcOutput | Print and summary methods for objects of class 'mcmcOutput' |
| summary.mcmcOutput | Print and summary methods for objects of class 'mcmcOutput' |
| sumryList | Print and summary methods for objects of class 'mcmcOutput' |
| tracePlot | Diagnostic graphics for class 'mcmcOutput' |
| window.mcmcOutput | Subsetting chains for 'mcmcOutput' objects |